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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttcttaccttctactaaaagaattaatgaaatcattacatggtttgatatttgtgaattaatgtatactattgcttaagttggttacctttgaacggatgtattagtctagcaaacaattttgtccacttttcattttctgactagtaattggcagGCATCTCACAGGTTGTAGAAGGTGACTTAGTGTATAACAAAGAATGCCCTTCAGAAGAATCAACTTCCGTAGATATTCTGGAAACTGATGATGACCATAC

Basic information

species Zea mays
transcript GRMZM2G096553_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096553_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g43374.1 (Oryza sativa), 3'ss of exon 8
gttagtttcttaccttctactaaa-------agaattaatgaaatcattacatggtttgatatttgtgaattaatgtatactattgcttaagttggtta--cctttgaacggatgta--ttagtctagcaaacaattttgtccacttttcatttt---ctgactagt--aattggcagGCATCTCACAGGTTGTAGAAGGTGACTTAGTGTATAACAAAGAATGCCCTTCAGAAGAATCAACTTCCGTAGATATTCTGGAAACTGATGATGACCATAC
|| |||    | | | || ||| |       ||  ||| |  |||||| |    |||||||| || |    ||| |  ||   |||      ||  | |  | | | | |   ||||  ||  | | |  |||   | | | | | || |   ||   || ||| ||  | ||| ||||||| || |||| |||||||||||||||||| |||| ||||||   |||| | | |||| ||||||| || |||| |   ||| ||   |||||||| | 
gtcagtgcacttcatccttctacagctactcagttttagttgaatcatgatgcagtttgataattttctgataacggctaaccttgacctttttcttcaggcgtgttaccttttgtagttttatatggtgaacttctcttttcccattcctccttatgctaactggtgtacttgacagGCATTTCGCAGGCTGTAGAAGGTGACTTAGTTTATAGCAAAGAGCCCCCTCCTGGAGAAGCAACTTCAGTTGATACTTCAGAACCTTGCGATGACCAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211061095|gb|FL320235.1|FL320235
EST:     CCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATG                         GCATCTCACAGGTTGTAGAAGGTGACTTAGTGTATAACAAAGAATGCCCTT
genomic: CCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATGgttagtttct ... taattggcagGCATCTCACAGGTTGTAGAAGGTGACTTAGTGTATAACAAAGAATGCCCTT
EST: gi|31353291|gb|CD437648.1|CD437648
EST:     CCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATG                         GCATCTCACAGGTTGTAGAACGTGACTT
genomic: CCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATGgttagtttct ... taattggcagGCATCTCACAGGTTGTAGAAGGTGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagtctagcaaacaattttgtccacttttcattttctgactagtaattggcagGCATCTCACAGGTTGTAGAAGGTGACTTAGTGTATAACAAAGAATGCCCTTCAGAAGAATCAACTTCCGTAGATATTCTGGAAACTGATGATGACCATAC
                                   ttctgac  putative branch site (score: 2)
           aaacaatttt  TA-rich tract