Sequence
atgc intronic sequence ATGC exonic sequencegttagtttcttaccttctactaaaagaattaatgaaatcattacatggtttgatatttgtgaattaatgtatactattgcttaagttggttacctttgaacggatgtattagtctagcaaacaattttgtccacttttcattttctgactagtaattggcagGCATCTCACAGGTTGTAGAAGGTGACTTAGTGTATAACAAAGAATGCCCTTCAGAAGAATCAACTTCCGTAGATATTCTGGAAACTGATGATGACCATAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G096553_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g43374.1 (Oryza sativa), 3'ss of exon 8
gttagtttcttaccttctactaaa-------agaattaatgaaatcattacatggtttgatatttgtgaattaatgtatactattgcttaagttggtta--cctttgaacggatgta--ttagtctagcaaacaattttgtccacttttcatttt---ctgactagt--aattggcagGCATCTCACAGGTTGTAGAAGGTGACTTAGTGTATAACAAAGAATGCCCTTCAGAAGAATCAACTTCCGTAGATATTCTGGAAACTGATGATGACCATAC
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gtcagtgcacttcatccttctacagctactcagttttagttgaatcatgatgcagtttgataattttctgataacggctaaccttgacctttttcttcaggcgtgttaccttttgtagttttatatggtgaacttctcttttcccattcctccttatgctaactggtgtacttgacagGCATTTCGCAGGCTGTAGAAGGTGACTTAGTTTATAGCAAAGAGCCCCCTCCTGGAGAAGCAACTTCAGTTGATACTTCAGAACCTTGCGATGACCAAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31353291|gb|CD437648.1|CD437648EST: CCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATG GCATCTCACAGGTTGTAGAACGTGACTT
genomic: CCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATGgttagtttct ... taattggcagGCATCTCACAGGTTGTAGAAGGTGACTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attagtctagcaaacaattttgtccacttttcattttctgactagtaattggcagGCATCTCACAGGTTGTAGAAGGTGACTTAGTGTATAACAAAGAATGCCCTTCAGAAGAATCAACTTCCGTAGATATTCTGGAAACTGATGATGACCATAC
ttctgac putative branch site (score: 2)
aaacaatttt TA-rich tract