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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtgaatttttctttcctggtcaactcaaatctaggcctctatggtgatgccgggctgtatccttgattccatctaccggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCGGCACTTCCCTGAGCCAACACGTCTTTACATCAGTTCTCGAGTCCAAACA

Basic information

species Zea mays
transcript GRMZM2G093359_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093359_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g10310.1 (Oryza sativa), 3'ss of exon 13
gtattgtgaatttttctttcctggtcaactcaaatctaggcctctat---------------------ggtgatgccgggctgtatccttgat----tccatctaccggttctt-cagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCGGCACTTCCCTGAGCCAACACGTCTTTACATCAGTTCTCGAGTCCAAACA
|||  |  |  |  |   || || ||||  ||||| |||  |||| |                     |  ||| ||  ||| |||| |||||    |||||||||  ||| || |||||||||||||||||  | || || ||||| |||||||||||||| ||||| |||||||| ||| ||||||  |           | ||    ||  | ||
gtacagcaatctcataagtcttgatcaaaccaaatttagagctcttttcgtctaaaacaaatatctttgaagattccatgctctatc-ttgatgccatccatctacatgtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCTGCACTTCCATGATCCAACATATAGAGGATAGCCTGCTTTCATCTCATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9028434|gb|BE238579.1|BE238579
EST:     AGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGC-AG                         GGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
genomic: AGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAGgtattgtgaa ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
EST: gi|19058677|gb|BM737344.1|BM737344
EST:     GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
genomic: GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAGgtattgtgaa ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
EST: gi|5499508|gb|AI855375.1|AI855375
EST:     GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGGCG
genomic: GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAGgtattgtgaa ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
EST: gi|5740120|gb|AI947810.1|AI947810
EST:     GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTCCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
genomic: GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAGgtattgtgaa ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
EST: gi|8516666|gb|BE123391.1|BE123391
EST:     GCAAGTTTTTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAG                         GGTGAAGGCTACACCATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
genomic: GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAGgtattgtgaa ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
EST: gi|149008950|gb|EE153723.2|EE153723
EST:     GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
genomic: GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAGgtattgtgaa ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
EST: gi|89252602|gb|DY624388.1|DY624388
EST:     GCAAGTTTTTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
genomic: GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAGgtattgtgaa ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
EST: gi|149090119|gb|EE179417.2|EE179417
EST:     GCAAGTTTTTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
genomic: GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAGgtattgtgaa ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
EST: gi|148983249|gb|EE029216.2|EE029216
EST:     GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGCCAGGATGCTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG
genomic: GCAAGTTTCTAGAAGATGGAGATGAGGTCATCTTGACAGGATGCTGCAAGgtattgtgaa ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcctctatggtgatgccgggctgtatccttgattccatctaccggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACTTGCACTGGGAAGGTCCTGCCGGCACTTCCCTGAGCCAACACGTCTTTACATCAGTTCTCGAGTCCAAACA
                            ccttgat  putative branch site (score: 5)
                                               ttcttc  putative PPT