Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaccgaaaagcaaacattgatcagtgtattctttgtctatataagcctaaaactgctgcattttttagGTTGCCGGAGGACTTCAAGAGCATGTAAGAAAGCTCAAAGAGAGCTTTAATTCTAGGATAGCAGAATTGCATGGTTTTGCAAATGAACTCAAGCATAAAT

Basic information

species Zea mays
transcript GRMZM2G083475_T01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211144808|gb|FL417406.1|FL417406
EST:     TAAAAGCACTTGAAGAAGAGATGCAGTCTTTTGTCACCTCAAAGGGCAAG                         GTTGCCGGAGGACTTCAAGAGCATGTAAGAAAGCTCAAAGAGAGCTTTAAT
genomic: TAAAAGCACTTGAAGAAGAGATGCAGTCTTTTGTCACCTCAAAGGGCAAGgtgcaccgaa ... cattttttagGTTGCCGGAGGACTTCAAGAGCATGTAAGAAAGCTCAAAGAGAGCTTTAAT
EST: gi|211245257|gb|FL399170.1|FL399170
EST:     TAAAAGCACTTGAAGAAGAGATGCAGTCTTTTGTCACCTCAAAGGGCAAG                         GTTGCCGGAGGACTTCAAGAGCATGTAAGAAAGCTCAAAGAGAGCTTTAAT
genomic: TAAAAGCACTTGAAGAAGAGATGCAGTCTTTTGTCACCTCAAAGGGCAAGgtgcaccgaa ... cattttttagGTTGCCGGAGGACTTCAAGAGCATGTAAGAAAGCTCAAAGAGAGCTTTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattgatcagtgtattctttgtctatataagcctaaaactgctgcattttttagGTTGCCGGAGGACTTCAAGAGCATGTAAGAAAGCTCAAAGAGAGCTTTAATTCTAGGATAGCAGAATTGCATGGTTTTGCAAATGAACTCAAGCATAAAT
                               gcctaaa  putative branch site (score: 3)
                                             catttttt  putative PPT
                                              atttttta  TA-rich tract