1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctgtatcatgaatcagattatcagaatgaatactgtagcctgtctccgtttgatttccattttcctctcatgagtattaatcttccaatgccacttccagGTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAAGTCAGTGTTACTGTGGAAACAGCTCATCCACGTGATGATATATTATCAG
species | Zea mays |
transcript | GRMZM2G082260_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGATTCTGAAGTTTGTCAAGGATCGTATGGGAGCTCTGCTTTTGGTGGAG GTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAAEST: gi|60395194|gb|DN228063.1|DN228063
genomic: TGATTCTGAAGTTTGTCAAGGATCGTATGGGAGCTCTGCTTTTGGTGGAGgtgaactgac ... ccacttccagGTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAA
EST: TGATTCTGAAGTTTGTCAAGGATCGTATGGGAGCTCTGCTTTTGGTGGAG GTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTAGGAGATCAAEST: gi|32837788|gb|CD977466.1|CD977466
genomic: TGATTCTGAAGTTTGTCAAGGATCGTATGGGAGCTCTGCTTTTGGTGGAGgtgaactgac ... ccacttccagGTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAA
EST: TGATTCTGAAGTTTGTCAAGGATCGTATGGGAGCTCTGCTTTTGGTGGAG GTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTAGGAGATCAAEST: gi|9731187|gb|BE509939.1|BE509939
genomic: TGATTCTGAAGTTTGTCAAGGATCGTATGGGAGCTCTGCTTTTGGTGGAGgtgaactgac ... ccacttccagGTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAA
EST: TGATTCTGAAGTTTGTTATGGATCGTATGGGAGCTCTGCTTTTGGTGGAG GTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGCGGGAGATCAAEST: gi|78026073|gb|DV494460.1|DV494460
genomic: TGATTCTGAAGTTTGTCAAGGATCGTATGGGAGCTCTGCTTTTGGTGGAGgtgaactgac ... ccacttccagGTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAA
EST: GCTCTGCTTTTGGTGGAG GTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAA
genomic: GCTCTGCTTTTGGTGGAGgtgaactgac ... ccacttccagGTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAA
ccgtttgatttccattttcctctcatgagtattaatcttccaatgccacttccagGTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAAGTCAGTGTTACTGTGGAAACAGCTCATCCACGTGATGATATATTATCAG
tattaat putative branch site (score: 2)
ccacttcc putative PPT
tattaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtatcatgaatcagattatcagaatgaatactgtagcctgtctccgtttgatttccattttcctctcatgagtattaatcttccaatgccacttccagGTTGGGATGCAAGTTACAACGACAATTTCACGTGGGAAAGTGGGAGATCAAGTCAGTGTTACTGTGGAAACAGCTCATCCACGTGATGATATATTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA