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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctacttactcagtaatgaattagcaaagtatcctacaggattcagaaacatttatccttgtttctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG

Basic information

species Zea mays
transcript GRMZM2G081682_T01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211073602|gb|FL380705.1|FL380705
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|31349785|gb|CD434142.1|CD434142
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|33092171|gb|CF052165.1|CF052165
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTAC
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTAC
EST: gi|6194746|gb|AW146850.1|AW146850
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|5296207|gb|AI782887.1|AI782887
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|74232803|gb|DT640717.1|DT640717
EST:     ATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: ATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|5846747|gb|AI999830.1|AI999830
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|211313620|gb|FL416741.1|FL416741
EST:     AGAGCCTAAACCACAGGAACCAACRAAACACCA                         GTATGACTGGAATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: AGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|31250143|gb|CD219167.1|CD219167
EST:     AACGGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCC
genomic: AACGGAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
EST: gi|211434578|gb|FL418942.1|FL418942
EST:     GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCA                         GTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT
genomic: GAACACTATTGATAGAGCCTAAACCACAGGAACCAACAAAACACCAgtatgctact ... tctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattagcaaagtatcctacaggattcagaaacatttatccttgtttctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG
                                 tttatccttgtttctc  CT-rich tract
                            aaacatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgctacttactcagtaatgaattagcaaagtatcctacaggattcagaaacatttatccttgtttctctggcagGTATGACTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT