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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

aACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG

Basic information

species Zea mays
transcript GRMZM2G081642_T03
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32858949|gb|CD998630.1|CD998630
EST:     TCACTTGGACTTTCTTTTAGATGAAA                         ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG
genomic: TCACTTGGACTTTCTTTTAGATG-AAa ... aACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttc
EST: gi|78125549|gb|DV543933.1|DV543933
EST:     GCTGCAGGACTTTCTTTTAGATGAAA                         ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG
genomic: --T---GGACTTTCTTTTAGATG-AAa ... aACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttc
EST: gi|211126998|gb|FL461335.1|FL461335
EST:     TTTCTTTTAGATGAAA                         ACCACAGCCTGCCCAAAGATTGATAGTGATAGTGTTGGACCACGATTGCA
genomic: TTTCTTTTAGATG-AAa ... aACCACAGCCTG-CCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... tt
EST: gi|21329781|gb|BQ485162.1|BQ485162
EST:     TCACTTGGACTTTCTTTTAGATGAAA                         ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG
genomic: TCACTTGGACTTTCTTTTAGATG-AAa ... aACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttc
EST: gi|21481154|gb|BQ577837.1|BQ577837
EST:     TCACTTGGACTTTCTTTTAGATGAAA                         ACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAG
genomic: TCACTTGGACTTTCTTTTAGATG-AAa ... aACCACAGCCTGCCAGAGATTGATAGTGATAGTGTTGGATCACGATTGCAGgtaaagttca ... ttc