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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgctgcacatttatcagtagcaacacaattttgtatcatgtagatgtttattgatctgaaatgtgatctatgtgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATGGTGACATCCTTGCGAGGCCAATGATGTACCTTGCGCTGACTTACGACC

Basic information

species Zea mays
transcript GRMZM2G079538_T03
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079538_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os04g32330.1 (Oryza sativa), 3'ss of exon 12
gtaactgctgcacatttatcagtagcaacacaattttgtatcatgtagatgtttattgatctga---aatgtgatctatgtgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATGGTGACATCCTTGCGAGGCCAATGATGTACCTTGCGCTGACTTACGACC
||  ||  | ||  |||  || | |||| |         |  | || ||| || ||| ||||||   ||||| || ||| |  | |||||||  ||||||| || ||||| |||||||| |||||||||||||| ||| | ||  |||| || ||||||||||||||||||||||||||||| || ||||
gtc-ctttttcatttttgccacttgcaaaaattgccctcactaggttgatattcattcatctgacacaatgt-atatatatctaatgcagTCTGCTATTCTTGGAATGCACTCCATTGTACAACGCCCTGTGGTCGTGGACGGCAACATTCTCGCGAGGCCAATGATGTACCTTGCGCTGACATATGACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211104575|gb|FL031921.1|FL031921
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGKGCAACGCCCTGTGGTTGKGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|6102024|gb|AW126494.1|AW126494
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|110528815|gb|EE032999.1|EE032999
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTTTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|31363969|gb|CD448324.1|CD448324
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|6021309|gb|AW066237.1|AW066237
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|13558099|gb|BG549455.1|BG549455
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|13558422|gb|BG549778.1|BG549778
EST:     GTGGTGTCTATGGAAGCTTTTTCTGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|31358903|gb|CD443260.1|CD443260
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|4804479|gb|AI665349.2|AI665349
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|211169880|gb|FL077609.1|FL077609
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCNTNCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAA
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAA
EST: gi|32830086|gb|CD969764.1|CD969764
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|211174261|gb|FL479898.1|FL479898
EST:     CTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: CTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|211081302|gb|FL464951.1|FL464951
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|13558100|gb|BG549456.1|BG549456
EST:     GCGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTG
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTG
EST: gi|6654256|gb|AW267661.1|AW267661
EST:     CTCCTCAGCACACCTATCATCAACCCTCCNCAG                         TCGTTTTTTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: CTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|32942914|gb|CF047733.1|CF047733
EST:     GTGGTGTCTATGGAAGCCTCCTCAACACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|32933424|gb|CF038236.1|CF038236
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|60358853|gb|DN225826.1|DN225826
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|6227238|gb|AW155837.1|AW155837
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTG-GGTTG
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTG
EST: gi|166470787|gb|EG142344.1|EG142344
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGG
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGG
EST: gi|149009739|gb|EE154080.2|EE154080
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTTTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|211169873|gb|FL077602.1|FL077602
EST:     TGGTGTCTATGGAAGCCTCCTCAGCACACCTAATCATCAACCCTC-ACAG                         TCGTCTATTCTGGGGATGCATT
genomic: TGGTGTCTATGGAAGCCTCCTCAGCACACCTA-TCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATT
EST: gi|148978724|gb|EE026282.2|EE026282
EST:     GTGGTGTTTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTTTATTTTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|32867029|gb|CF006711.1|CF006711
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|8368148|gb|BE051093.1|BE051093
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|78022452|gb|DV490839.1|DV490839
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|14548407|gb|BI096736.1|BI096736
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|166524759|gb|EG130537.1|EG130537
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCA
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCA
EST: gi|32858121|gb|CD997802.1|CD997802
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|13562254|gb|BG550474.1|BG550474
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|24766295|gb|CA401450.1|CA401450
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|21626137|gb|BQ621058.1|BQ621058
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|32867030|gb|CF006712.1|CF006712
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|67019048|gb|CO447797.1|CO447797
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
EST: gi|44900266|gb|CK826811.1|CK826811
EST:     GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAG                         TCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT
genomic: GTGGTGTCTATGGAAGCCTCCTCAGCACACCTATCATCAACCCTCCACAGgtaactgctg ... tgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgtatcatgtagatgtttattgatctgaaatgtgatctatgtgaattgcagTCGTCTATTCTGGGGATGCATTCCATTGTGCAACGCCCTGTGGTTGTGAATGGTGACATCCTTGCGAGGCCAATGATGTACCTTGCGCTGACTTACGACC
                     tattgat  putative branch site (score: 3)
                atgtttatt  TA-rich tract