1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aacgacaggcatggtagttatttcatctcgtttgcattaaggcactagttactatactgcaaattgattctgtggcctttgctgactttgttcttgccagGTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTATTTGGGAGGTCTGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATC
species | Zea mays |
transcript | GRMZM2G078458_T05 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAG GTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTEST: gi|110940705|gb|EE160862.1|EE160862
genomic: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAGgttagcactt ... ttcttgccagGTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCT
EST: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAG GTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTEST: gi|211219812|gb|FL295368.1|FL295368
genomic: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAGgttagcactt ... ttcttgccagGTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCT
EST: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAG GTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTEST: gi|166619822|gb|EG205168.1|EG205168
genomic: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAGgttagcactt ... ttcttgccagGTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCT
EST: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAG GTTGGATATAGTGAAGACAGAGAAACEST: gi|71766034|gb|DR963971.1|DR963971
genomic: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAGgttagcactt ... ttcttgccagGTTGGATATAGTGAAGACAGAGAAAC
EST: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAG GTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTEST: gi|148953146|gb|EE152627.2|EE152627
genomic: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAGgttagcactt ... ttcttgccagGTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCT
EST: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAG GTGGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTEST: gi|71761805|gb|DR959742.1|DR959742
genomic: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAGgttagcactt ... ttcttgccagGTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCT
EST: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAG GTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTEST: gi|86473471|gb|DY239841.1|DY239841
genomic: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAGgttagcactt ... ttcttgccagGTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCT
EST: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAG GTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCT
genomic: TTGCCATGCAAGAACATGAGCTTGAACAGGTTGCTTCTTTACTTGGAGAGgttagcactt ... ttcttgccagGTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCT
tagttactatactgcaaattgattctgtggcctttgctgactttgttcttgccagGTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTATTTGGGAGGTCTGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATC
tgctgac putative branch site (score: 32)
ctttgttctt CT-rich tract
aaattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacgacaggcatggtagttatttcatctcgtttgcattaaggcactagttactatactgcaaattgattctgtggcctttgctgactttgttcttgccagGTTGGATATAGTGAAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTATTTGGGAGGTCTGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATC
- - - aggcatg
- - - - - - - - - - - - - - - -ttgcatt
- - - - - - - - - - - - - - - - - - - - -gcactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattctg