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gtcattctgtttgctacttcacgttcatgttttctccagaatttacacatgttctttgtcaagttttcattaacagaatttgacaatatgtggtcctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTTTGCATGCTGCTGATCTCATTCACGAGGCATCAAATGCCATCGCCCTAG
species | Zea mays |
transcript | GRMZM2G073774_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|67029833|gb|CO458582.1|CO458582
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|211287326|gb|FL348627.1|FL348627
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|13315813|gb|BG410365.1|BG410365
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|24767210|gb|CA402354.1|CA402354
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|16378693|gb|BI992557.1|BI992557
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|31362407|gb|CD446764.1|CD446764
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|78075765|gb|DV504199.1|DV504199
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|211284887|gb|FL322128.1|FL322128
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|4885872|gb|AI676992.1|AI676992
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|60340265|gb|DN207238.1|DN207238
genomic: AGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|67018763|gb|CO447512.1|CO447512
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTEST: gi|31353176|gb|CD437533.1|CD437533
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
EST: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAG TTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
genomic: AGGCTAACACTAAAGCTTTGGCAGAAAATGAAGGAGATGGGATTGCTAAGgtcattctgt ... ctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGT
gttctttgtcaagttttcattaacagaatttgacaatatgtggtcctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTTTGCATGCTGCTGATCTCATTCACGAGGCATCAAATGCCATCGCCCTAG
tcctcac putative branch site (score: 276)
tcctcact CT-rich tract
ttttcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattctgtttgctacttcacgttcatgttttctccagaatttacacatgttctttgtcaagttttcattaacagaatttgacaatatgtggtcctcactgcagTTGATTTACCGACCTGACACGGGTGAAATTCTTGGGGTTCACATTTTGGGTTTGCATGCTGCTGATCTCATTCACGAGGCATCAAATGCCATCGCCCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT