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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtactggagaacattcactaacattcatgtccttggttttcttgcttctaaaacatggttgctttgcttgtaatttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAG

Basic information

species Zea mays
transcript GRMZM2G069758_T02
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166331|gb|BM336170.1|BM336170
EST:     GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT                         AAATATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTG
genomic: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
EST: gi|33097992|gb|CF057952.1|CF057952
EST:     GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT                         AAATATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTG
genomic: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
EST: gi|33096068|gb|CF056062.1|CF056062
EST:     GGAACTGGAGATTTGGCAACTGCTCTCCTACTAGGATGGAGTAAT                         AAATATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTG
genomic: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
EST: gi|8102609|gb|AW927412.1|AW927412
EST:     AGGATGGAGTAAT                         AAATATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTG
genomic: AGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
EST: gi|17931888|gb|BM268848.1|BM268848
EST:     GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT                         AAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
genomic: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
EST: gi|67022839|gb|CO451588.1|CO451588
EST:     GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT                         AAATATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTG
genomic: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
EST: gi|40303606|gb|CK347993.1|CK347993
EST:     GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT                         AAATATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTG
genomic: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
EST: gi|16922789|gb|BM075781.1|BM075781
EST:     GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAAT                         AAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG
genomic: GGAACTGGAGATTTGACAACTGCTCTCCTACTAGGATGGAGTAATgtgagtactg ... atttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtccttggttttcttgcttctaaaacatggttgctttgcttgtaatttacacagAAATATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAG
                  ttctaaa  putative branch site (score: 2)
                                        ttgtaattta  TA-rich tract