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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgatcccctctccactatcacactcttggcccttgatccttattagcccaaccacacccccacacgccatatttgttgcagtatctgaacttgattctctctttggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTCACAGCTATGGATATCCCACCACCCCGTGGCCCTCTCTG

Basic information

species Zea mays
transcript GRMZM2G065757_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G065757_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g49200.2 (Oryza sativa), 3'ss of exon 11
---------------------------------gtgtgatcccctctccactatcacact--cttggcccttg---atccttattagcccaacca-----cacccccacacgccatatttgttgcagtatctgaacttgattctctctttggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTCACAGCTATGGATATCCCACCACCCCGTGGCCCTCTCTG
                                  | |  |||| |     |    | | |  ||      |||   |  |||    ||||| | |            |   | |  | | | |  || |  | |  |    |||   ||||||| ||||||| |||||||||||||||||||||   ||||||||||||||||| ||||||||||| ||||| ||||| || |||||||| ||||||||
gtgcgatgatttctttatggtttctcttcttttttttcttcccttgggtgcatctagattagctgaaaagttggacacgcttgccggcccatctagtttgtgtagatatttgacgcactggcttgagcacataatttactctcttcttttggttgtgcagTATATTCTGAAGGTTGGTGAAGGAGCTGCTGCCCAGTGCATCAGTGGATTCACAGCCATGGACATCCCTCCTCCCCGTGGTCCTCTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213167748|gb|FM184910.1|FM184910
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|67017226|gb|CO445975.1|CO445975
EST:     CATTGCGTTCACCATTTGGAG-CAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTNGGTGAAG-ACANGCTGCCCANTGCATCANCNGATT
genomic: CATTGCGTTCACCATT-GGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTT-GGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATT
EST: gi|86856157|gb|DY307168.1|DY307168
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|33096169|gb|CF056163.1|CF056163
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|213179239|gb|FM192959.1|FM192959
EST:     GCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: GCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|211092713|gb|FK945553.1|FK945553
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|31354952|gb|CD439309.1|CD439309
EST:     ACATTGCGTTCACCATTGGAGGCAATAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|67038995|gb|CO465250.1|CO465250
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|32918238|gb|CF023050.1|CF023050
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGGTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|213179820|gb|FM194304.1|FM194304
EST:     GGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: GGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|32912159|gb|CF016971.1|CF016971
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|16919046|gb|BM074015.1|BM074015
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|211361839|gb|FL432808.1|FL432808
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|21621076|gb|BQ619082.1|BQ619082
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|116816042|gb|EC858742.1|EC858742
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCCAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAA
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAA
EST: gi|33096659|gb|CF056653.1|CF056653
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|33096356|gb|CF056350.1|CF056350
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|47962340|gb|CN845049.1|CN845049
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|60337171|gb|DN204144.1|DN204144
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|38229766|gb|CF920079.1|CF920079
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
EST: gi|61119127|gb|DN560088.1|DN560088
EST:     ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAATCAGAGCAG                         TACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCAGAGCAGgtgtgatccc ... ggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacacgccatatttgttgcagtatctgaacttgattctctctttggttatgcagTACATTCTGAAGGTTGGTGAAGGACAGGCTGCCCAGTGCATCAGCGGATTCACAGCTATGGATATCCCACCACCCCGTGGCCCTCTCTG
                             acttgat  putative branch site (score: 5)
                                   ttctctctttggtt  CT-rich tract
         atatttgtt  TA-rich tract