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...ttgatacctcaactcaactgtacagtttattaacccttctaataagcagctgccagtctttctgacgtaatagtaaagaaaaaaatgttctttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAACACACCAGAAGTCATGCGTGTCTACATAGG
species | Zea mays |
transcript | GRMZM2G065012_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAG CTGATGAGAGTGTACGGAGCEST: gi|50323441|gb|CO518567.1|CO518567
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGC
EST: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAG CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAACEST: gi|78124010|gb|DV542394.1|DV542394
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
EST: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAT CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGAGAAAGTCCTGAAC
genomic: ACAAGATACGCATAGTTCTCAACAAGGCCGACCAAGTTGATGCACAGCAGgcgagtattg ... tttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAAC
gcagctgccagtctttctgacgtaatagtaaagaaaaaaatgttctttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAACACACCAGAAGTCATGCGTGTCTACATAGG
ttctgac putative branch site (score: 2)
tgttctttttttc putative PPT
taatagtaaagaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatacctcaactcaactgtacagtttattaacccttctaataagcagctgccagtctttctgacgtaatagtaaagaaaaaaatgttctttttttcagCTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAACACACCAGAAGTCATGCGTGTCTACATAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - aactcaa
- - - - - - - - -ctgtaca
- - - - - - - - - - - - - - - - - - - - - - -gcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa