1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gccctaacagctttttagtttacatgttctaacgacgtgctttctgctttgttgtctgaaaacatacgcgtttatttgcaatattttatttatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAGAAAGCTGTAAAAGCATCCGTCAAATAA
species | Zea mays |
transcript | GRMZM2G064695_T04 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAAAGGATTCTTAAG GAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAGEST: gi|113791641|gb|DW913466.1|DW913466
genomic: TTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAGgtaagagctg ... tatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAG
EST: GGATTCTTAAG GAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAGEST: gi|18162086|gb|BM331925.1|BM331925
genomic: GGATTCTTAAGgtaagagctg ... tatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAG
EST: TTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAG GAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAGEST: gi|166652168|gb|EG083409.1|EG083409
genomic: TTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAGgtaagagctg ... tatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAG
EST: TTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAAAGGATTCTTAAG GAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGEST: gi|113831703|gb|DW948357.1|DW948357
genomic: TTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAGgtaagagctg ... tatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATG
EST: TTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAG GAAAGTGGAATGACTTTGATCEST: gi|211240437|gb|FL261944.1|FL261944
genomic: TTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAGgtaagagctg ... tatcttgcagGAAAGTGGAATGACTTTGATC
EST: TTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAG GAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAREST: gi|166626099|gb|EG158853.1|EG158853
genomic: TTGTTCGGTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAGgtaagagctg ... tatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAG
EST: GTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAG GAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAG
genomic: GTTGGAAGGCACCAATGTAGACCAAGGAAAGAGGATTCTTAAGgtaagagctg ... tatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAG
gctttgttgtctgaaaacatacgcgtttatttgcaatattttatttatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAGAAAGCTGTAAAAGCATCCGTCAAATAA
ttttattt CT-rich tract
tttatttgcaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccctaacagctttttagtttacatgttctaacgacgtgctttctgctttgttgtctgaaaacatacgcgtttatttgcaatattttatttatcttgcagGAAAGTGGAATGACTTTGATCACTGCAGAAGATCTTGATGATGCGGCAGAGAAAGCTGTAAAAGCATCCGTCAAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG