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...ctttaattgcttgcaacctgctagctactgtgtttttttgtcatgtccttggcccttgggtttgacttatcttctgttcatggtactcatccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG
species | Zea mays |
transcript | GRMZM2G063909_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTG GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAATEST: gi|60345083|gb|DN212056.1|DN212056
genomic: TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaatatttg ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT
EST: TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTG GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAATEST: gi|40334210|gb|CK368280.1|CK368280
genomic: TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaatatttg ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT
EST: GAAGGCGGGAATATCAGTTCTCATACTGGTCATCTG GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAATEST: gi|60354991|gb|DN221964.1|DN221964
genomic: GAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaatatttg ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT
EST: TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTG GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT
genomic: TGATCATGAAGGCGGGAATATCAGTTCTCATACTGGTCATCTGgtaatatttg ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAAT
tccttggcccttgggtttgacttatcttctgttcatggtactcatccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG
gtttgac putative branch site (score: 4)
ctcatcc putative PPT
ttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttaattgcttgcaacctgctagctactgtgtttttttgtcatgtccttggcccttgggtttgacttatcttctgttcatggtactcatccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG
- - - -tgcttgc
- - - - - - - - cctgcta
- - - - - - - - - - - -gctactg
- - - - - - - - - - - - - - - tgttttt
- - - - - - - - - - - - - - - - - - - - -catgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtact