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gtagcttttgtttagaaatgtttcatttttaatgcacttactggtggtgacatcagtcaattttttcctgaactagttgtgtacagatgtttttttgaaacagctgcattcaaattttagaattaatgaattatattgtttcatttgttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGCGGCAAATTTCTCACACATGCTTGGTTTTGACGACCCAAAAATGCTGGAG
species | Zea mays |
transcript | GRMZM2G063851_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAAGTTCTTTGGACTATGEST: gi|21480820|gb|BQ577503.1|BQ577503
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAA-TTCTTTGGACTATG
EST: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGCEST: gi|78179069|gb|DV549442.1|DV549442
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGCEST: gi|211131286|gb|FL186945.1|FL186945
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGCEST: gi|149014218|gb|EE043773.2|EE043773
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGCEST: gi|149105261|gb|EE290752.2|EE290752
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG AATTTTTCA-GAGTGGGAAATCAATEST: gi|6964715|gb|AW433408.1|AW433408
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTT-CAAGAGTGGGAAATCAAT
EST: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGAC-ATGCEST: gi|78087725|gb|DV516118.1|DV516118
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: TTAAATTTGATTGCTCGGCTTC-ACCAGTGGCTTCTTATGTTTACCGGAG AATTTTTCA-GAGTGGGAAATCAATAGAAGCCGATTATTCTTTGGACTATGEST: gi|76010585|gb|DT937755.1|DT937755
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTT-CAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATG
EST: GTTTACCGGAG AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGCEST: gi|7238183|gb|AW573405.1|AW573405
genomic: GTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGCEST: gi|7145414|gb|AW506895.1|AW506895
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGCEST: gi|67040702|gb|CO466957.1|CO466957
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
EST: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG AATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
genomic: TTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttg ... ttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGC
gctgcattcaaattttagaattaatgaattatattgtttcatttgttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGCGGCAAATTTCTCACACATGCTTGGTTTTGACGACCCAAAAATGCTGGAG
aattaat putative branch site (score: 204)
tttcatttgtttttt putative PPT
attcaaattttagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcttttgtttagaaatgtttcatttttaatgcacttactggtggtgacatcagtcaattttttcctgaactagttgtgtacagatgtttttttgaaacagctgcattcaaattttagaattaatgaattatattgtttcatttgttttttgaagAATTTTCAAGAGTGGGAAATCAATAGAAGCCGATAATTCTTTGGACTATGCGGCAAATTTCTCACACATGCTTGGTTTTGACGACCCAAAAATGCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA