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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttccttcccagatttcactcatgtgggagccttcggcacttggtctgcccatgatttagctcagtaatactcaatttactctcttgtctctgatccagTGCGGTGTGGAGTTTGCTGCGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTAT

Basic information

species Zea mays
transcript GRMZM2G061681_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061681_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os01g42950.1 (Oryza sativa), 3'ss of exon 12
--atttccttcccagatttcactcatgtg----ggagccttcggcacttggtct----gcccat-gatttagctcagtaata-----ctcaatttactctcttgtctctgatccagTGCGGTGTGGAGTTTGCTGCGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTAT
   | | |||   | | ||   |   ||       |  | |   || ||  | |    ||| || |||||  |   |||| |     || | |||||||  ||| |  |||||||||| ||||| |||||||||||||| || |||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||| ||||| || ||||
gtttgttcttgatatagtttgtttcagtattgctaaatcatgaacaattattttttatgccaattgatttttccttgtaaaagatatcttattttactcatttgccaatgatccagTGTGGTGTTGAGTTTGCTGCGGAGTACGTGATTCCTCTCGTCTTCCCACTGCTCACAGCACATCAACTGAATGTACAGCAATTTGCTAAGTACATACTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211454621|gb|FL182680.1|FL182680
EST:     CGCCAACTCTTATGTGCACACTTGGTGTTGCTAATGCAATCTATAAACAA                         TGTGGTGTGGAGTTTGCTGCGGAATATGTGATTCCTCTCATCTTCCCATTA
genomic: CGCCAACTCTTATGTGCACACTTGGTGTTGCTAATGCAATCTATAAACAAgttagttctt ... tctgatccagTGCGGTGTGGAGTTTGCTGCGGAATATGTGATTCCTCTCATCTTCCCATTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgcccatgatttagctcagtaatactcaatttactctcttgtctctgatccagTGCGGTGTGGAGTTTGCTGCGGAATATGTGATTCCTCTCATCTTCCCATTACTCACAGCACATCAACTGAATGTACAACAATTTGCCAAGTATATGCTAT
                                            ctctgat  putative branch site (score: 4)
                               tttactctcttgtctc  CT-rich tract
                     taatactcaattta  TA-rich tract