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gtgcggctaagactggcattgtttggcataccacaatatattagatgtcttaactcttcgaatttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATGATGGTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCC
species | Zea mays |
transcript | GRMZM2G060977_T05 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|78107953|gb|DV526371.1|DV526371
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|60352542|gb|DN219515.1|DN219515
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|148949106|gb|EC894535.2|EC894535
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATAT-TTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|149085023|gb|EE174532.2|EE174532
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|113702665|gb|EE680169.1|EE680169
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCTCCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|9730867|gb|BE509619.1|BE509619
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|37395454|gb|CF635007.1|CF635007
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|60342148|gb|DN209121.1|DN209121
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|60342166|gb|DN209139.1|DN209139
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|88746930|gb|DY531071.1|DY531071
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCGCCGAGGTTCTGGGTTTGTCACCTTCGCTGATEST: gi|148942651|gb|EC887670.2|EC887670
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCCCCGAGGTTTTGGGTTTGTCCCCTTCGCTGATEST: gi|211424816|gb|FL445164.1|FL445164
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|211138006|gb|FL213711.1|FL213711
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|32864876|gb|CF004558.1|CF004558
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATEST: gi|40336792|gb|CK370862.1|CK370862
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
EST: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAG GACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
genomic: GGCAGTACTTTGGCAGATTTGGTCGAATCGTAGATGCATATATTCCAAAGgtgcggctaa ... ttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGAT
ttgtttggcataccacaatatattagatgtcttaactcttcgaatttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATGATGGTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCC
tcttaac putative branch site (score: 2)
tttctgt putative PPT
acaatatattagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggctaagactggcattgtttggcataccacaatatattagatgtcttaactcttcgaatttctgtacagGACCCCAAAAGAAGCGGCCACCGAGGTTTTGGGTTTGTCACCTTCGCTGATGATGGTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC