1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gaaaattcttcattcaacctgactttttttttcattcaacggtgtattttatcctccaaaatttcatttttgcaagtttcttactgtttgaagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCAGGGGATGGCAGATTTCAACAAGGCAATATCTTCAGCAAAAACTGACGAG
species | Zea mays |
transcript | GRMZM2G059039_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAG GTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCAAAGCGACTAACTCAEST: gi|9732110|gb|BE510862.1|BE510862
genomic: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAGgtagcttaca ... aagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCA
EST: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAG GTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCAAAGCGACTAACTCAEST: gi|26558849|gb|CA831084.1|CA831084
genomic: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAGgtagcttaca ... aagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCA
EST: CAGAGCATTACAAAGATTTCACAGAGAG GTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCAAAGCGACTAACTCAEST: gi|87156817|gb|DY401606.1|DY401606
genomic: CAGAGCATTACAAAGATTTCACAGAGAGgtagcttaca ... aagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCA
EST: CAGAGCATTACAAAGATTTCACAGAGAG GTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCAAAGCGACTAACTCAEST: gi|32933981|gb|CF038793.1|CF038793
genomic: CAGAGCATTACAAAGATTTCACAGAGAGgtagcttaca ... aagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCA
EST: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAG GTTAACTGGAACAGAAGAGACGGTEST: gi|60352216|gb|DN219189.1|DN219189
genomic: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAGgtagcttaca ... aagtacacagGTTAACTGGAACAGAAGAGACGGT
EST: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAG GTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCAEST: gi|22546055|gb|BU098376.1|BU098376
genomic: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAGgtagcttaca ... aagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCA
EST: CAGAGCATTACAAAGATTTCACAGAGAG GTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCAAAGCGACTAACTCAEST: gi|67024010|gb|CO452759.1|CO452759
genomic: CAGAGCATTACAAAGATTTCACAGAGAGgtagcttaca ... aagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCA
EST: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAG GTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCAEST: gi|31357379|gb|CD441736.1|CD441736
genomic: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAGgtagcttaca ... aagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCA
EST: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAG GTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCAAAGCGACTAACTCA
genomic: GATAGACTTGGAGAGGACTTCTCAGAGCATTACAAAGATTTCACAGAGAGgtagcttaca ... aagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCA
attttatcctccaaaatttcatttttgcaagtttcttactgtttgaagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCAGGGGATGGCAGATTTCAACAAGGCAATATCTTCAGCAAAAACTGACGAG
ttcttac putative branch site (score: 208)
aaaatttcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaattcttcattcaacctgactttttttttcattcaacggtgtattttatcctccaaaatttcatttttgcaagtttcttactgtttgaagtacacagGTTAACTGGAACAGAAGAGACGGTACGAGCAGCCTCCAAGCGACTAACTCAGGGGATGGCAGATTTCAACAAGGCAATATCTTCAGCAAAAACTGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttt