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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcctttttggtcgctttctcaccctatgattctgataacctggtgtttgctaagtttctaagcatgacgttatctgttttaatggatgtccttgccccttccttccatgtgcttgatttgcagATCCAGGGGATCGCATCACGCTGCAGGCTGCGGCTGAGCATCCTTGGGTTGCTGGTGATGAGGGGCCAGTCCCTGAATTCATCTGTAGATGTGGGTTTGG

Basic information

species Zea mays
transcript GRMZM2G057084_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057084_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os03g50330.1 (Oryza sativa), 3'ss of exon 11
gtgccttttt-------ggtcgctttctcaccctatgattctgataacctggtgtttgctaagtttctaagcatgacgttatctgttttaatggatgtccttgccccttccttccatgtgcttgatttgcagATCCAGGGGATCGCATCACGCTGCAGGCTGCGGCTGAGCATCCTTGGGTTGCTGGTGATGAGGGGCCAGTCCCTGAATTCATCTGTAGATGTGGGTTTGG
|| | |||||           | ||   | || ||||||||||  | | |  ||| |  ||   | | |   ||    ||||   |  ||||| |  | ||      || |  | ||||| |||  ||||||||||||   |||| ||||| ||||||||||  | ||||||||||||||||||||| ||  ||||||||||   ||||| | |||||||||||||||||||
gttcttttttcaaaataaactgtttcaccgccttatgattctggca-cattttgtgtcttag--tgccagatata---ttattc-tactaatgaacattctcttgtgtttccac-atgtggttgtcttgcagATCCAGCAAATCGTATCACCCTGCAGGCTGTAGGTGAGCATCCTTGGGTTGCTGGGGACCAGGGGCCAGTTGTTGAATACTTCTGTAGATGTGGGTTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211432932|gb|FL230799.1|FL230799
EST:     AGACATGAACCCCCAACTTGCTGATTTGCTCCTAAGGCTTCTATGCAAAG                         ATCCAGGGGATCGCATCACGCTGCAGGCTGCGGCTGAGCATCCTTGGGTTG
genomic: AGACATGAACCCCCAACTTGCTGATTTGCTCCTAAGGCTTCTCTGCAAAGgtgccttttt ... tgatttgcagATCCAGGGGATCGCATCACGCTGCAGGCTGCGGCTGAGCATCCTTGGGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatctgttttaatggatgtccttgccccttccttccatgtgcttgatttgcagATCCAGGGGATCGCATCACGCTGCAGGCTGCGGCTGAGCATCCTTGGGTTGCTGGTGATGAGGGGCCAGTCCCTGAATTCATCTGTAGATGTGGGTTTGG
      tgttttaat  TA-rich tract