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...acttagaaactgcattcagtgatagaatgacttgcttgaatgcttggcatgttttttgttcacatgtcctgacgccttaaaacgaattttctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGAGACAAATGCTGGAATGGTCCTGACCGAAGCCTAAAG
species | Zea mays |
transcript | GRMZM2G052875_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGEST: gi|60350253|gb|DN217226.1|DN217226
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGEST: gi|211376353|gb|FL146646.1|FL146646
genomic: GAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GGGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGEST: gi|18964528|gb|BM661058.1|BM661058
genomic: GGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACCTTTCAGGTGGEST: gi|18964529|gb|BM661059.1|BM661059
genomic: GGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGEST: gi|211376351|gb|FL146644.1|FL146644
genomic: GGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGEST: gi|87151897|gb|DY396686.1|DY396686
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGEST: gi|211084967|gb|FL399106.1|FL399106
genomic: GCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGEST: gi|211376352|gb|FL146645.1|FL146645
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GCATATAAGATAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGEST: gi|211072830|gb|FL342711.1|FL342711
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGNEST: gi|31359162|gb|CD443519.1|CD443519
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGEST: gi|67026048|gb|CO454797.1|CO454797
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
EST: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGG GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
genomic: GCATATAAGAAAGCATCACAGGCTGAAGGGCACAGTTCCACCAACCTGGGgtatgcttct ... ctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGG
ggcatgttttttgttcacatgtcctgacgccttaaaacgaattttctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGAGACAAATGCTGGAATGGTCCTGACCGAAGCCTAAAG
tcctgac putative branch site (score: 199)
ttttctatc putative PPT
ttaaaacgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttagaaactgcattcagtgatagaatgacttgcttgaatgcttggcatgttttttgttcacatgtcctgacgccttaaaacgaattttctatcatcagGAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGAGACAAATGCTGGAATGGTCCTGACCGAAGCCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA