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...tacattcgaataacctcctcttagggaattttgaaagcccagaaagattgtaagccagtatggctatatcttacacctttgggatatctgtttcctgaagGAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACGAGCATGAGCTGATAACGAAACCGAATGCTGACGGCCACGTGAACAACT
species | Zea mays |
transcript | GRMZM2G052546_T07 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT GAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACEST: gi|67023551|gb|CO452300.1|CO452300
genomic: GACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatac ... tttcctgaagGAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAAC
EST: TGACATATGACGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT GAAGGACGGTATGAATACAAATACGTAGTGGATGGCANATGGCTATGCAACEST: gi|32833578|gb|CD973256.1|CD973256
genomic: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatac ... tttcctgaagGAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAAC
EST: TGACATATGATGAGGAGTAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT GAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACEST: gi|32833853|gb|CD973531.1|CD973531
genomic: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatac ... tttcctgaagGAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAAC
EST: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT GA----CGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACEST: gi|33091895|gb|CF051889.1|CF051889
genomic: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatac ... tttcctgaagGAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAAC
EST: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCT GAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAAC
genomic: TGACATATGATGAGGAGAAAGGAGCTTGGTTTCTTGAGAAAGAGTTGCCTgtgagtatac ... tttcctgaagGAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAAC
gattgtaagccagtatggctatatcttacacctttgggatatctgtttcctgaagGAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACGAGCATGAGCTGATAACGAAACCGAATGCTGACGGCCACGTGAACAACT
atcttac putative branch site (score: 3)
tctgtttcct putative PPT
tatatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacattcgaataacctcctcttagggaattttgaaagcccagaaagattgtaagccagtatggctatatcttacacctttgggatatctgtttcctgaagGAAGGACGGTATGAATACAAATACGTAGTGGATGGCAAATGGCTATGCAACGAGCATGAGCTGATAACGAAACCGAATGCTGACGGCCACGTGAACAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG