1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...gtgacaatcatattgctcaagaaggcagccattataactagcttggtaactgagttattgccagcgattactatttttttttcattgtcttgcttcgcagTCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTCTCAG
species | Zea mays |
transcript | GRMZM2G047093_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTAAACTAGAAGATTCAATTAGGGATTCTGGATGCTTTCCTGGATG TCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTCEST: gi|19057925|gb|BM736592.1|BM736592
genomic: TTTCTTAAACTAGAAGATTCAATTAGGGATTCTGGATGCTTTCCTGGATGgtaatcctta ... tgcttcgcagTCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTC
EST: TTTCTTAAACTAGAAGATTCAATTAGGGATTCTGGATGCTTTCCTGGATG TCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTCEST: gi|18963332|gb|BM660375.1|BM660375
genomic: TTTCTTAAACTAGAAGATTCAATTAGGGATTCTGGATGCTTTCCTGGATGgtaatcctta ... tgcttcgcagTCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTC
EST: TTTCTTAAACTAGAAGATTCAATTAGGGATTCTGGATGCTTTCCTGGATG TCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTCEST: gi|31349081|gb|CD433438.1|CD433438
genomic: TTTCTTAAACTAGAAGATTCAATTAGGGATTCTGGATGCTTTCCTGGATGgtaatcctta ... tgcttcgcagTCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTC
EST: TTTCTTAAACTAGAAGATTCAATTAGGGATTCTGGATGCTTTCCTGGATG TCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTC
genomic: TTTCTTAAACTAGAAGATTCAATTAGGGATTCTGGATGCTTTCCTGGATGgtaatcctta ... tgcttcgcagTCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTC
gtaactgagttattgccagcgattactatttttttttcattgtcttgcttcgcagTCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTCTCAG
tggtaac putative branch site (score: 130)
tttttttttcattgtc putative PPT
attactattttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacaatcatattgctcaagaaggcagccattataactagcttggtaactgagttattgccagcgattactatttttttttcattgtcttgcttcgcagTCCACAGAAGGAGCCTCCTTCCACACTGTTGTGGACCCTGTTTTTGATTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - tattgct
- - - - - - - - - - - - gcagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccagc