1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttggtatcttattttgttcatttctaataggaaagttatatggctagaacatcggagtaatgatcctttttgtcttacacagGTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGAGACACTGTACCACGCTGACAAGGAGAAGACTGAAGCATATATCCTCGAG
species | Zea mays |
transcript | GRMZM2G046846_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGCTCACCATGGTTTCGGTTGGGTTGGAGAGTGGGCAAATACTGG GTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGAEST: gi|6564139|gb|AW231761.1|AW231761
genomic: GGCTCACCATGGTTTCGGTTGGGTTGGAGAGTGGGCAAATACTGGgttggtatct ... tcttacacagGTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGA
EST: GGCTCACCATGGTTTCGGTTGGGTTGGAGAGTGGGCAAATACTGG GTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGAEST: gi|13149512|gb|BG319834.1|BG319834
genomic: GGCTCACCATGGTTTCGGTTGGGTTGGAGAGTGGGCAAATACTGGgttggtatct ... tcttacacagGTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGA
EST: GTGGGCAAATACTGG GTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGA
genomic: GTGGGCAAATACTGGgttggtatct ... tcttacacagGTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGA
taggaaagttatatggctagaacatcggagtaatgatcctttttgtcttacacagGTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGAGACACTGTACCACGCTGACAAGGAGAAGACTGAAGCATATATCCTCGAG
gtcttac putative branch site (score: 95)
tcctttttgtcttac CT-rich tract
aagttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtatcttattttgttcatttctaataggaaagttatatggctagaacatcggagtaatgatcctttttgtcttacacagGTCAGATGTGAACTGCAAGCCAAATGGGCAGATAGACCTGATCCGAATTGAGACACTGTACCACGCTGACAAGGAGAAGACTGAAGCATATATCCTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC