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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattacaatcatttaattatgtcagatgctacaatgcatgatagttatgttatacgcgctgcatttctctagcaatacaaagctttgtaaacatgatcattgagatgtgatgaactattgttgctaagctttgttatcaacatctgttgcttgtttcttagGTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGGCAACGATGATGGGCTTTACATTAGCAGCGTGGCTTCCTCGGCAAACCTT

Basic information

species Zea mays
transcript GRMZM2G037923_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 12
lower sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 9
gtaattacaatcatttaattatgtcagatgctacaatgcatgatagttatgttatacgcgctgcatttctctagcaatacaaagctttgtaaacatgatcattgagatgtgatgaactattgttgctaagctttgttatcaacatctgttgcttgtttcttagGTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGGCAACGATGATGGGCTTTACATTAGCAGCGTGGCTTCCTCGGCAAACCTT
                                                                                                           |   |     | ||  || || || |    | |   |  | ||| |  |||  ||||||||| || ||||| || || ||  |  ||   |||||| | || || |||||||| |||||||||||||| || ||||||||||| |   |||| || 
----------------------------------------------------------------------------------------------------------gtaaaaactgtttttaatggtatgcctctgaagctggaggttttgttgcttttatagGTACCACTATAATGTAGCCGATTCTCGTTTAGCTCAACATGTGGAGAAAGGCAACGAGGATGGGCTTTACATCAGTAGCGTGGCTTCGTGCTCAAATCTC

upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 12
lower sequence: EFJ38433 (Selaginella moellendorffii), 3'ss of exon 9
gtaattacaatcatttaattatgtcagatgctacaatgcatgatagttatgttatacgcgctgcatttctctagcaatacaaagctttgtaaacatgatcattgagatgtgatgaactattgttgctaagctttgttatcaacatctgttgcttgtttcttagGTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGGCAACGATGATGGGCTTTACATTAGCAGCGTGGCTTCCTCGGCAAACCTT
                                                                                                           |   |     | ||  || || || |    | |   | || ||| |  |||  ||||||||| || ||||| || || ||  |  ||   |||||| | || || |||||||| |||||||||||||| || ||||||||||| |   |||| || 
----------------------------------------------------------------------------------------------------------gtaaaaactgtttttaatggtatgcctctgaagctggagcttttgttgcttttatagGTACCACTATAATGTAGCCGATTCTCGATTAGCTCAACATGTGGAGAAAGGCAACGAGGATGGGCTTTACATCAGTAGCGTGGCTTCGTGCTCAAATCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32869986|gb|CF009668.1|CF009668
EST:     GCGGCTCAATGGATTTCAGTTTATAATGCTAGGCGGCCCATGAAGCAGAG                         GTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGG
genomic: GCGGCTCAATGGATTTCAGTTTATAATGCTAGGCGGCCCATGAAGCAGAGgtaattacaa ... tgtttcttagGTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGG
EST: gi|33097651|gb|CF057611.1|CF057611
EST:     GCGGCTCAATGGATTTCAGTTTATAATGCTAGGCGGCCCATGAAGCAGAG                         GTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGG
genomic: GCGGCTCAATGGATTTCAGTTTATAATGCTAGGCGGCCCATGAAGCAGAGgtaattacaa ... tgtttcttagGTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGG
EST: gi|33096688|gb|CF056682.1|CF056682
EST:     GCGGCTCAATGGATTTCAGTTTATAATGCTAGGCGGCCCATGAAGCAGAG                         GTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGG
genomic: GCGGCTCAATGGATTTCAGTTTATAATGCTAGGCGGCCCATGAAGCAGAGgtaattacaa ... tgtttcttagGTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGG
EST: gi|31355521|gb|CD439878.1|CD439878
EST:     GCGGCTCAATGGATTTCAGTTTATAATGCTAGGCGGCCCATGAAGCAGAG                         GTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGG
genomic: GCGGCTCAATGGATTTCAGTTTATAATGCTAGGCGGCCCATGAAGCAGAGgtaattacaa ... tgtttcttagGTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatgaactattgttgctaagctttgttatcaacatctgttgcttgtttcttagGTACCATTACAATGTGGCTGACTCGAGGCTAAGCCAACATATAGAAAAGGGCAACGATGATGGGCTTTACATTAGCAGCGTGGCTTCCTCGGCAAACCTT
                                           cttgtttctt  CT-rich tract
                       tttgttat  TA-rich tract