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gttacctccatcagacattcacacattttcttactacacataagtatgcaactatgcattccaatgtgtatgattgttttgatcagGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCAGATGGTCTTATCCTTGGAACAGGAACTACTGATGCTGTTGTTAAAATTT
species | Zea mays |
transcript | GRMZM2G037698_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG GTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCAEST: gi|32908360|gb|CF013173.1|CF013173
genomic: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctcca ... ttttgatcagGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCA
EST: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG GTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCAEST: gi|32934237|gb|CF039049.1|CF039049
genomic: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctcca ... ttttgatcagGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCA
EST: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG GTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCACCCAEST: gi|32933281|gb|CF038093.1|CF038093
genomic: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctcca ... ttttgatcagGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCA
EST: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG GTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCAEST: gi|32837457|gb|CD977135.1|CD977135
genomic: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctcca ... ttttgatcagGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCA
EST: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG GTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCAEST: gi|33103734|gb|CF063694.1|CF063694
genomic: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctcca ... ttttgatcagGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCA
EST: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAG GTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCA
genomic: ATAATTCGTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGACACAGgttacctcca ... ttttgatcagGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCA
tactacacataagtatgcaactatgcattccaatgtgtatgattgttttgatcagGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCAGATGGTCTTATCCTTGGAACAGGAACTACTGATGCTGTTGTTAAAATTT
ttcttac putative branch site (score: 71)
ttgtttt putative PPT
ataagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacctccatcagacattcacacattttcttactacacataagtatgcaactatgcattccaatgtgtatgattgttttgatcagGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCCGCGTCTTTCCATCCAGATGGTCTTATCCTTGGAACAGGAACTACTGATGCTGTTGTTAAAATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT