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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttccctccttgttttctttcattagtttctgcatcaattgcagagctagatatatgtctatatacagattgaaattttacacgtgcgccggtatactgaacattttttcagGTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGATGGGCGTTCTGTAAAATCAATTATTGCTCACGTGGCTCCACTGAAACTT

Basic information

species Zea mays
transcript GRMZM2G036050_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036050_T03 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os09g39590.1 (Oryza sativa), 3'ss of exon 12
gtaagtttttccctccttgttttctttcattagtttctgcatcaattgcagagctagatatatgtctatatacagattgaaattttacacgtgcgccggtatactgaacattttttcagGTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGATGGGCGTTCTGTAAAATCAATTATTGCTCACGTGGCTCCACTGAAACTT
                |   ||| |||    | || || |||   |||     ||   ||| | | | || | | ||      |||||   |       |||  | |||||||||  |||| ||||| || || ||||| |  |||||||||||||||||||| ||||||||||| |||||||||||  |||||||||| ||||| ||| | ||||||
---------------gtaagttttttttcccatttacttcatt--ttgtctgtctgtttatttatttctagaaaaatc-----tttacttctatttaattatgatcaacattttt--agGTGCAAGTCAAGTGTTCATTAGCATATATGGACTTTGAAGGTCGGTCTGATGGGCGCTCTGTAAAATCTGTTATTGCTCATGTGGCCCCATTAAAACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348741|gb|DN215714.1|DN215714
EST:     GCCTGCTTCTTGATTCAACGCCCTCAAAAGTCATTTCCAACGAGATGACT                         GTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGAT
genomic: GCCTGCTTCTTGATTCAACGCCCTCAAAAGTCATTTCCAACGAGATGACTgtaagttttt ... attttttcagGTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGAT
EST: gi|5847327|gb|AW000406.1|AW000406
EST:     GCCTGCTTCTTGATTCAACGCCCTCAAAAGTCATTTCCAACGAGATGACT                         GTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGAT
genomic: GCCTGCTTCTTGATTCAACGCCCTCAAAAGTCATTTCCAACGAGATGACTgtaagttttt ... attttttcagGTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGAT
EST: gi|211178129|gb|FL062330.1|FL062330
EST:     GCCTGCTTCTTGATTCAACGCCCTCAAAAGTCATTTCCAACGAGATGACT                         GTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGAT
genomic: GCCTGCTTCTTGATTCAACGCCCTCAAAAGTCATTTCCAACGAGATGACTgtaagttttt ... attttttcagGTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatatacagattgaaattttacacgtgcgccggtatactgaacattttttcagGTTCAAGTGAAATGCTCATTGGTTTATATGGACTTTGAAGGTCGCTCTGATGGGCGTTCTGTAAAATCAATTATTGCTCACGTGGCTCCACTGAAACTT
                                            cattttttc  CT-rich tract
         agattgaaatttta  TA-rich tract