Sequence
atgc intronic sequence ATGC exonic sequencegtatgtggttattttatggttgattttttcaaacaaacttagctttggtatctggttaaatatctagttctgtaagctgacaggggaaagaaggcaaatccgcttatctttttctgaacatactaagttgaatgtgtatttattacttttttcttccagGCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G032222_T03 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 3'ss of exon 12
gtatgtggttat-tttatggttgattttttcaaacaaacttagctttggtatctggttaaatatctagttctgtaagctgacaggggaaaga-aggcaaat-ccgcttatctttttctgaacatactaagttgaatgtgtatttattacttttttcttccagGCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG
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gtatgtgattatgtttgttacagacttcct-gaaca---tttattttg---tctaattaagtattccgtcatacaagcttttgaagtgaggatatgcagtttctgttttttcctttctgaagctattgagcagacag---atttatttatattctgttacagGCATTTGAATATGGATTTATTCCAGGCATTGCCTTGTCTGCACTGGAACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31353246|gb|CD437603.1|CD437603EST: AGAAGTCATGGATATGGGAAGAACTTCATAAAGCTAGGAATTATAGACCA GCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG
genomic: AGAAGTCATGGATATGGGAAGAACTTCATAAAGCTAGGAATTATAGACCAgtatgtggtt ... tttcttccagGCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatctttttctgaacatactaagttgaatgtgtatttattacttttttcttccagGCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG
tatttattactttttt CT-rich tract
aatgtgtatttattac TA-rich tract