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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtggttattttatggttgattttttcaaacaaacttagctttggtatctggttaaatatctagttctgtaagctgacaggggaaagaaggcaaatccgcttatctttttctgaacatactaagttgaatgtgtatttattacttttttcttccagGCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG

Basic information

species Zea mays
transcript GRMZM2G032222_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032222_T03 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 3'ss of exon 12
gtatgtggttat-tttatggttgattttttcaaacaaacttagctttggtatctggttaaatatctagttctgtaagctgacaggggaaaga-aggcaaat-ccgcttatctttttctgaacatactaagttgaatgtgtatttattacttttttcttccagGCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG
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gtatgtgattatgtttgttacagacttcct-gaaca---tttattttg---tctaattaagtattccgtcatacaagcttttgaagtgaggatatgcagtttctgttttttcctttctgaagctattgagcagacag---atttatttatattctgttacagGCATTTGAATATGGATTTATTCCAGGCATTGCCTTGTCTGCACTGGAACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353246|gb|CD437603.1|CD437603
EST:     AGAAGTCATGGATATGGGAAGAACTTCATAAAGCTAGGAATTATAGACCA                         GCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG
genomic: AGAAGTCATGGATATGGGAAGAACTTCATAAAGCTAGGAATTATAGACCAgtatgtggtt ... tttcttccagGCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctttttctgaacatactaagttgaatgtgtatttattacttttttcttccagGCATTTGAATACGGATTAATTCCGGGTATGGTTTTGTCTGCACTGGAACG
                                tatttattactttttt  CT-rich tract
                          aatgtgtatttattac  TA-rich tract