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...agtttcaagtctatgtgcccccttgtaatgcatgccttgaaacaagttcactgtaaagtggcagcatgatttcatcatttttttattcttgtgttgtcagGAGGATAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCG
species | Zea mays |
transcript | GRMZM2G030144_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGTCTTGTCTCTCTTTTGAAGCTTTCCTCCCGGTTTCCACCAACATCAGA GAGGATAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTEST: gi|166494311|gb|EG110655.1|EG110655
genomic: TGTCTTGTCTCTCTTTTGAAGCTTTCCTCCCGGTTTCCACCAACATCAGAgtaagttatt ... gtgttgtcagGAGGATAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATT
EST: TGTCTTGTCTCTCTTTTGAAGCTTTCCTCCCGGTTTCCACCAACATCAGA GAGGATAAAAGAAATAGTTGCGCEST: gi|67037313|gb|CO464163.1|CO464163
genomic: TGTCTTGTCTCTCTTTTGAAGCTTTCCTCCCGGTTTCCACCAACATCAGAgtaagttatt ... gtgttgtcagGAGGATAAAAGAAATAGTTGCGC
EST: TGTCTTGTCTCTCTTTTGAAGCTTTCCTCCCGGTTTCCACCAACATCAGA GAGGATAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATT
genomic: TGTCTTGTCTCTCTTTTGAAGCTTTCCTCCCGGTTTCCACCAACATCAGAgtaagttatt ... gtgttgtcagGAGGATAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATT
gttcactgtaaagtggcagcatgatttcatcatttttttattcttgtgttgtcagGAGGATAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCG
tttttttattcttgt CT-rich tract
atgatttcatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttcaagtctatgtgcccccttgtaatgcatgccttgaaacaagttcactgtaaagtggcagcatgatttcatcatttttttattcttgtgttgtcagGAGGATAAAAGAAATAGTTGCGCAAAATAAAGGGAATACTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - -tatgtgc
- - - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - -aaacaag
- - - - - - - - - - - - - - - - - - - - - - - ttcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagcat