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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgagttcgtctttcctgatcaattcagatctaggcctctacagtgacgctaggctgtattttgattccaccatccgctggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCGGCACTTCCCTGAGCCAACACGTCTTGGCATCAGTTCTCCGGAGTCTCAA

Basic information

species Zea mays
transcript GRMZM2G029566_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029566_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g10310.1 (Oryza sativa), 3'ss of exon 13
gtactgtgagttcgtctttcctgatcaattcagatctaggcctct-----------acagt----------gacgctaggctgtattttgattcca-ccatccgc-tggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCGGCACTTCCCTGAGCCAACACGTCTTGGCATCAGTTCTCCGGAGTCTCAA--
|||| |  |  || |   || |||||||  || || |||  ||||           |||            ||  | | ||| ||| ||||| ||| |||||  | || || | |||||||||||||||||  | || || ||||||||||| |||||||||||||| |||||||| ||| ||||||  |   ||    ||    |     |||||   
gtacagcaatctcataagtcttgatcaaaccaaatttagagctcttttcgtctaaaacaaatatctttgaagattccatgctctatcttgatgccatccatctacatgtttttacagGGTGAAGGCTACAATGTCGGATTCGGAACCTGCACTGGGAAGGTTCTGCCTGCACTTCCATGATCCAACATATAGAGGA--TAGCCTGCTTTCATCTCATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12972515|gb|BG268020.1|BG268020
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAA
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAA
EST: gi|110933692|gb|EE153918.1|EE153918
EST:     AAGTTCCTAGAAGATGGAGATGGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: AAGTTCCTAGAAGATGGAGAT-GAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273148|gb|FL031471.1|FL031471
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|89764160|gb|DY691068.1|DY691068
EST:     CAAGTTCCTAGAAGATGGAGATGAAGTCATCTAGAGCAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: CAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGA-CAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|76920585|gb|DV168249.1|DV168249
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|149099313|gb|EE185349.2|EE185349
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273139|gb|FL031462.1|FL031462
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|31355627|gb|CD439984.1|CD439984
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAGGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|113704214|gb|EE681718.1|EE681718
EST:     TGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: TGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|6403389|gb|AW171864.1|AW171864
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCCCCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|148929744|gb|EC876669.2|EC876669
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|29545139|gb|CB605317.1|CB605317
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211248919|gb|FL466732.1|FL466732
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|71328227|gb|DR800747.1|DR800747
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|148983239|gb|EE029205.2|EE029205
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|33096207|gb|CF056201.1|CF056201
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|78124352|gb|DV542736.1|DV542736
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273147|gb|FL031470.1|FL031470
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|60346412|gb|DN213385.1|DN213385
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|149082177|gb|EE171358.2|EE171358
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273144|gb|FL031467.1|FL031467
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|213191212|gb|FM191474.1|FM191474
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273149|gb|FL031472.1|FL031472
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|83278342|gb|DV942350.1|DV942350
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|148949166|gb|EC894602.2|EC894602
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCCCCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|4730752|gb|AI649918.1|AI649918
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211274945|gb|FL031473.1|FL031473
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|116829759|gb|EC871644.1|EC871644
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAT                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273143|gb|FL031466.1|FL031466
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGKTCTGSCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|4610044|gb|AI600883.1|AI600883
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCCCCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211059340|gb|FL474462.1|FL474462
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273142|gb|FL031465.1|FL031465
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|91052882|gb|EB163300.1|EB163300
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273145|gb|FL031468.1|FL031468
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273141|gb|FL031464.1|FL031464
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAA                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|149042086|gb|EE047064.2|EE047064
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211273140|gb|FL031463.1|FL031463
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAA                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|148946153|gb|EC891447.2|EC891447
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCCCCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|116829718|gb|EC871187.1|EC871187
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAT                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|86465953|gb|DY232326.1|DY232326
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|211228559|gb|FL433551.1|FL433551
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
EST: gi|149076832|gb|EE165487.2|EE165487
EST:     GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAG                         GGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG
genomic: GCAAGTTCCTAGAAGATGGAGATGAAGTCATCTTGACAGGATGTTGCAAGgtactgtgag ... ggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctctacagtgacgctaggctgtattttgattccaccatccgctggttcttcagGGTGAAGGCTACAACATTGGTTTTGGAACCTGCACCGGGAAGGTTCTGCCGGCACTTCCCTGAGCCAACACGTCTTGGCATCAGTTCTCCGGAGTCTCAA
                         ttttgat  putative branch site (score: 4)
                                               ttcttc  putative PPT
                       tattttgatt  TA-rich tract