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gtaagtatgtaatgtaattctttcaatggtaattaataagtgcataaatgtctaaattctaaaactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTTTCCCAAATCAAAGCAACAACTAAGATTCCAGTTTTAGGTCATGCTG
species | Zea mays |
transcript | GRMZM2G028535_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCG CTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTTEST: gi|33094388|gb|CF054382.1|CF054382
genomic: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCGgtaagtatgt ... aactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTT
EST: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCG CTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTTEST: gi|32931519|gb|CF036331.1|CF036331
genomic: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCGgtaagtatgt ... aactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTT
EST: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCG CTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTTEST: gi|24934245|gb|CA452463.1|CA452463
genomic: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCGgtaagtatgt ... aactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTT
EST: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCG CTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTTEST: gi|211307860|gb|FL092738.1|FL092738
genomic: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCGgtaagtatgt ... aactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTT
EST: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCG CTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTTEST: gi|211307861|gb|FL092739.1|FL092739
genomic: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCGgtaagtatgt ... aactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTT
EST: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCG CTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTTEST: gi|211307862|gb|FL092740.1|FL092740
genomic: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCGgtaagtatgt ... aactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTT
EST: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCG CTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTTEST: gi|32932079|gb|CF036891.1|CF036891
genomic: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCGgtaagtatgt ... aactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTT
EST: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCG CTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTT
genomic: AGCTCATAGGCCTTGTGACTAGCAAAGAGGAAATTGCTGATCTACTAGCGgtaagtatgt ... aactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTT
ttctttcaatggtaattaataagtgcataaatgtctaaattctaaaactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTTTCCCAAATCAAAGCAACAACTAAGATTCCAGTTTTAGGTCATGCTG
ttctaaa putative branch site (score: 2)
ataaatgtctaaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatgtaatgtaattctttcaatggtaattaataagtgcataaatgtctaaattctaaaactttgcagCTTGATGATGTAATTGATCTTGTCATTCCGAGAGGTAGTAAGTCTCTAGTTTCCCAAATCAAAGCAACAACTAAGATTCCAGTTTTAGGTCATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG