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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtcttgagcctgtggttattggttgatgagtcaaaacatatgttacatagtgaatcatatgatattttccttttcagATTGGCTGGATCTATGGATCAGTTACAGAGGATATTCTAACTGGTTTCAAGATGCATTGTCATGGTTGGCGGTCAATTTACTGCATACCTAAACGGCCTG

Basic information

species Zea mays
transcript GRMZM2G028353_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028353_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os07g24190.2 (Oryza sativa), 3'ss of exon 8
gtaaagtcttgagcctg-----tggttattggttgatgagtcaaaacatatgttacatagtgaatcatatgatattttccttttcagATTGGCTGGATCTATGGATCAGTTACAGAGGATATTCTAACTGGTTTCAAGATGCATTGTCATGGTTGGCGGTCAATTTACTGCATACCTAAACGGCCTG
|||| | || |||||||     || | | ||||| ||   |  |||||| | |||  |||| ||| ||||       |   || ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||  ||||
gtaaggactggagcctgattgctgttaactggttaattgattgaaacatttcttaactagttaattatat------ctttgttgcagATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAGATGCACTGCCATGGTTGGCGGTCAATTTACTGCATACCTAAACTACCTG

upper sequence: GRMZM2G028353_T02 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA06G47420.1 (Glycine max), 3'ss of exon 16
----------------gtaaagtcttgagc----ctgtggttattggttgatgagtcaaaacatatgt-tacatagtgaatcatatgatattttcctt-----ttcagATTGGCTGGATCTATGGATCAGTTACAGAGGATATTCTAACTGGTTTCAAGATGCATTGTCATGGTTGGCGGTCAATTTACTGCATACCTAAACGGCCTG
                 | ||    |  |     || |   | ||  |     |||   ||| | |    |   | | ||   ||  | | || | ||      |||| |||| ||||||||||| ||||||||||| |||||  | || ||||| || |||||||||||||| ||| | || || || || |  |||| | | ||||
gtaatgaaatctttccattaatcactatgttcttctctaagtcttcttgctcaagttgtaacttgtaagcatggattcaactctaaaaaaattcctttaattgctcagGTTGGGTGGATCTATGGTTCAGTTACAGAAGATATATTGACAGGTTTTAAAATGCATTGTCATGGATGGAGATCTATATATTGTACTCCTAGAAGACCTG

upper sequence: GRMZM2G028353_T02 (Zea mays), 3'ss of exon 12
lower sequence: Vv03s0038g04250.t01 (Vitis vinifera), 3'ss of exon 12
---------gtaaagtcttgagcc---tgtggttattggttgatgagtcaaaacatatgttacatag----tgaatcatatgatattttccttt--tcagATTGGCTGGATCTATGGATCAGTTACAGAGGATATTCTAACTGGTTTCAAGATGCATTGTCATGGTTGGCGGTCAATTTACTGCATACCTAAACGGCCTG
         ||   |  |||  ||   |  ||||| ||| |    | |  |  |   | ||  | |       || |  |    |||  | |||  |||| | || |||||||||||||| |||||||| |||||  | || ||||| || |||||||| ||||| ||||| || || |||||||| ||| |  |||| |
tttttctaggttttgcattgctccctgtaaggttactggctatctatttgatcctgtttttctagaaatttcaaaactaacttcattgccttttattcagGTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAAATGCATTGCCATGGATGGCGATCCATATACTGCATCCCTGACAGGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgagtcaaaacatatgttacatagtgaatcatatgatattttccttttcagATTGGCTGGATCTATGGATCAGTTACAGAGGATATTCTAACTGGTTTCAAGATGCATTGTCATGGTTGGCGGTCAATTTACTGCATACCTAAACGGCCTG
 ggttgat  putative branch site (score: 5)
                                        tattttccttttc  putative PPT
                              aatcatatgatatttt  TA-rich tract