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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgctctctgccttgtccaactttgcacccgtcccctctagagggatctcccaagttttaactcttcctcttgcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG

Basic information

species Zea mays
transcript GRMZM2G027851_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027851_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 12
-------------------------------------------gttcgtgctctctgccttgtccaactttgcacccgtccc------------ctctagagggatctcccaagttttaactcttcctcttgcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG
                                            |  ||  |      ||  ||   |  |  |   |||||               |||     |||||  |   |||||| |  |  |||||| ||||||| || |||||||| || ||| ||||||||||||| || ||||||||||||||||| |||||||| || || ||||||||||||
gtcagtccgtcagtgcaagactattgcttcacaccatctgtatatctgtatttctcttctcatcttgccattaattagtcccaggagaagtatgtcttagtttcttctccttaagcttaactgtctcg-ttgcaattgcagTTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATG

upper sequence: GRMZM2G027851_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os07g47100.3 (Oryza sativa), 3'ss of exon 13
-------------------------------------------gttcgtgctctctgccttgtccaactttgcacccgtccc------------ctctagagggatctcccaagttttaactcttcctcttgcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG----------------
                                            |  ||  |      ||  ||   |  |  |   |||||               |||     |||||  |   |||||| |  |  |||||| ||||||| || |||||||| || ||| ||||||||||||| || ||||||||||||||||| |||||||| || || ||||||||||||                
gtcagtccgtcagtgcaagactattgcttcacaccatctgtatatctgtatttctcttctcatcttgccattaattagtcccaggagaagtatgtcttagtttcttctccttaagcttaactgtctcg-ttgcaattgcagTTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGGTGAGTCATCTTACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93281413|gb|EB673677.1|EB673677
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|50333104|gb|CO528230.1|CO528230
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|89755588|gb|DY685957.1|DY685957
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|93282180|gb|EB674444.1|EB674444
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|71437105|gb|DR818155.1|DR818155
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|74238598|gb|DT646512.1|DT646512
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|78093452|gb|DV521826.1|DV521826
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|71760181|gb|DR958118.1|DR958118
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|71761590|gb|DR959527.1|DR959527
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|88750196|gb|DY534337.1|DY534337
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|71446906|gb|DR827956.1|DR827956
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCG
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCG
EST: gi|71758416|gb|DR956353.1|DR956353
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|78074782|gb|DV503216.1|DV503216
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|26455862|gb|CA827445.1|CA827445
EST:     GGACTGATGAGAGGTGCCG-GTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|93281414|gb|EB673678.1|EB673678
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|37382323|gb|CF628103.1|CF628103
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|76013009|gb|DT940179.1|DT940179
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|76293702|gb|DV033270.1|DV033270
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|74239374|gb|DT647288.1|DT647288
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|19770144|gb|BQ034865.1|BQ034865
EST:     GTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|71427238|gb|DR808288.1|DR808288
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|78115472|gb|DV533860.1|DV533860
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|37399694|gb|CF637180.1|CF637180
EST:     GGGCCGGAATGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACAATGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|71760562|gb|DR958499.1|DR958499
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|71440636|gb|DR821686.1|DR821686
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
EST: gi|78080129|gb|DV508541.1|DV508541
EST:     GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAG                         TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC
genomic: GGGCCGGACTGATGAGAGGTGCCGTGTCCATTGCTCTCGCTTACAACAAGgttcgtgctc ... gcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccgtcccctctagagggatctcccaagttttaactcttcctcttgcaactgcagTTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATG
                            ttttaac  putative branch site (score: 2)
                                  ctcttcctcttgc  CT-rich tract
                         aagttttaa  TA-rich tract