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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagtctagagcttgtggttattgctttatgagtcaaaacatatgttagatagtgaatcatatgtcatcttacttttcagattggctggatctatggatcagTTACAGAAGATATTCTAACTGGTTTCAAGATGCATTGTCATGGTTGGCGGTCAATTTACTGCATACCTAAACGGGTTGCATTCAAAGGTTCTGCACCTCT

Basic information

species Zea mays
transcript GRMZM2G025231_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025231_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os07g24190.2 (Oryza sativa), 3'ss of exon 8
gtgaagtctagagcttg-----tggttattgctttatgagtcaaaacatatgttagatagtgaatcatatgtcatcttacttttcagattggctggatctatggatcagTTACAGAAGATATTCTAACTGGTTTCAAGATGCATTGTCATGGTTGGCGGTCAATTTACTGCATACCTAAACGGGTTGCATTCAAAGGTTCTGCACCTCT
|| | | || |||| ||     || | | || || ||   |  |||||| | |||  |||| ||| |||| |         || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||    ||                      
gtaaggactggagcctgattgctgttaactggttaattgattgaaacatttcttaactagttaattatatctt------tgttgcagATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAGATGCACTGCCATGGTTGGCGGTCAATTTACTGCATACCTAAACTACCTG----------------------

upper sequence: GRMZM2G025231_T01 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA06G47420.1 (Glycine max), 3'ss of exon 16
-----------------------gtgaagtctagagcttgtggttattgct----ttatgagtca-aaacatatgttagatagtgaatcatatgtcatcttacttttcagattggctggatctatggatcagTTACAGAAGATATTCTAACTGGTTTCAAGATGCATTGTCATGGTTGGCGGTCAATTTACTGCATACCTAAACGGGTTGCATTCAAAGGTTCTGCACCTCT
                          | ||      ||     || |||||    || | | |   || |||   ||  |   | ||  | |  || | | | |  |||| |||| ||||||||||| |||||||||||||||||  | || ||||| || |||||||||||||| ||| | || || || || |  |||| | |   ||                      
gtaatgaaatctttccattaatcactatgttcttctctaagtcttcttgctcaagttgtaacttgtaagcatggattcaactctaaa--aaaattcctttaattgctcagGTTGGGTGGATCTATGGTTCAGTTACAGAAGATATATTGACAGGTTTTAAAATGCATTGTCATGGATGGAGATCTATATATTGTACTCCTAGAAGACCTG----------------------

upper sequence: GRMZM2G025231_T01 (Zea mays), 3'ss of exon 12
lower sequence: Vv03s0038g04250.t01 (Vitis vinifera), 3'ss of exon 12
-------------------gtgaagtctagagcttgtggttattgctttatgagtcaaaacatatgttagatagtgaatcatatgtcat--cttacttttcagattggctggatctatggatcagTTACAGAAGATATTCTAACTGGTTTCAAGATGCATTGTCATGGTTGGCGGTCAATTTACTGCATACCTAAACGGGTTGCATTCAAAGGTTCTGCACCTCT
                   |     | ||  | |  ||| |||  || | |||  |      | |   | ||    || |  |  ||||  | |  | ||||| | || |||||||||||||| ||||||||||||||  | || ||||| || |||||||| ||||| ||||| || || |||||||| ||| |  ||   |                      
tttttctaggttttgcattgctccctgtaaggttactggctat--ctatttgatcctgtttttctag-aaatttcaaaactaacttcattgccttttattcagGTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAAATGCATTGCCATGGATGGCGATCCATATACTGCATCCCTGACAGGCCAG----------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatagtgaatcatatgtcatcttacttttcagattggctggatctatggatcagTTACAGAAGATATTCTAACTGGTTTCAAGATGCATTGTCATGGTTGGCGGTCAATTTACTGCATACCTAAACGGGTTGCATTCAAAGGTTCTGCACCTCT
                   atcttac  putative branch site (score: 3)
        aatcatat  TA-rich tract