1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tccactgataaaatattctccaactttgctgcacaaaatatttggaatagttgtattgttaatttacttttagtggacagcccttaaccatgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAGATGAGCACGACAAAGCAGATAAAGCCTGACAGAAATGGTTTCTTCTTC
species | Zea mays |
transcript | GRMZM2G024733_T02 |
intron # | 12 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTT ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAEST: gi|38688202|gb|CK145233.1|CK145233
genomic: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
EST: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTG ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
genomic: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
aatagttgtattgttaatttacttttagtggacagcccttaaccatgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAGATGAGCACGACAAAGCAGATAAAGCCTGACAGAAATGGTTTCTTCTTC
gcccttaac putative branch site
ttgtattgttaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccactgataaaatattctccaactttgctgcacaaaatatttggaatagttgtattgttaatttacttttagtggacagcccttaaccatgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAGATGAGCACGACAAAGCAGATAAAGCCTGACAGAAATGGTTTCTTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
-ccactga
- - - - - - - - - - - - -ttgctgc
- - - - - - - - - - - - - - - - acaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtattg