Sequence
atgc intronic sequence ATGC exonic sequence...ttcattccatcaattcattatacataaaaggcatacctgcatctacctactctttgtactgtgctcatgcagtcatgcctttcttacatttaacttgcagATAGCAAGGAACATTACAACAAATGAGATGGCAAATTCCATGAGATATGCATATCTCAGAGGCCCAGGTGGCAGATTCAGGAACCCGTATGATCATGGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G024437_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os06g43680.1 (Oryza sativa), 3'ss of exon 12
ttcattccatcaattcattatacataaaaggcatacctgcatctacctactctttgtactgtgct--catgcagtcatgcctttcttacatttaacttgcagATAGCAAGGAACATTACAACAAATGAGATGGCAAATTCCATGAGATATGCATATCTCAGAGGCCCAGGTGGCAGATTCAGGAACCCGTATGATCATGGGA
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--ggtagctataactttttcagaatggacacgaggacttgaggagcattttttctgttctgttttatgacgtgttcatgccttacttccatctcccatgcagATAGCGAAGAACATTACAACAAACGAGATGGCAAATTCCATGAGATACAGTTATCTAAGAGGTCCAGGTGGAAGATTCAGAAACCCATTTGACCATGGAG
upper sequence: GRMZM2G024437_T02 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA13G23230.1 (Glycine max), 3'ss of exon 13
----------------ttcattccatcaattcattatacataaaaggcatac-ctgcatctacctactctttgtactgtgctcatgcagtcatgcctttcttacatttaacttgcagATAGCAAGGAACATTACAACAAATGAGATGGCAAATTCCATGAGATATGCATATCTCAGAGGCCCAGGTGGCAGATTCAGGAACCCGTATGATCATGGGA
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gtatgtcttagaaggtcttatttagtttttttcttttgtgcacaagaagttctctactttgatctgaagcacgtgcctttttt------ttttttccctactactttcatgacacagATATCACGCAATATCACAACAAATGAAATGGCAAATGCACTGCGGTATAATTACCTCAGAGGTCCAGGTGGTAGATTCAGAAACCCATATGATCATGGTA
upper sequence: GRMZM2G024437_T02 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA17G11600.1 (Glycine max), 3'ss of exon 12
---------------ttcattccatcaattcattatacataaaaggcatacctgcatctacctactctttgtactgtgctcatgcagtcatgcctttcttacatttaacttgcagATAGCAAGGAACATTACAACAAATGAGATGGCAAATTCCATGAGATATGCATATCTCAGAGGCCCAGGTGGCAGATTCAGGAACCCGTATGATCATGGGA
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gtatgtcttagaagatcttatttgtttttttcttttatgcacaagaaattctctcctctga------tctgaagcacgtgtttttttttcttctactttgtctttcataacgcagATATCACGCAATATTACAACAAATGAAATGGCAAATGCAATGCGGTATAGTTACCTCAGAGGTCCAGGTGGTAGATTTAGAAACCCATATGATCATGGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctactctttgtactgtgctcatgcagtcatgcctttcttacatttaacttgcagATAGCAAGGAACATTACAACAAATGAGATGGCAAATTCCATGAGATATGCATATCTCAGAGGCCCAGGTGGCAGATTCAGGAACCCGTATGATCATGGGA
cctttcttacattt CT-rich tract
tttcttacatttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcattccatcaattcattatacataaaaggcatacctgcatctacctactctttgtactgtgctcatgcagtcatgcctttcttacatttaacttgcagATAGCAAGGAACATTACAACAAATGAGATGGCAAATTCCATGAGATATGCATATCTCAGAGGCCCAGGTGGCAGATTCAGGAACCCGTATGATCATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT