Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gataagatatttgttttgtttcaaaacagaatagttgatcagcattccttgaatctttcatgtttcatctattattaacattctttcttaaattatccagCTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCC

Basic information

species Zea mays
transcript GRMZM2G023798_T01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023798_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os02g04710.1 (Oryza sativa), 3'ss of exon 12
gataagatatttgttttgtttcaaaacagaatagttgatcagcattccttgaatcttt----catgtttcatctattattaacattctttcttaaa-ttatccagCTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCC
       |   |||  | |||  | |  || || | || || | |||| ||   || |     |||||||||  || ||| |||  | || || || || ||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
---ccattggctgtaatatttttatattgacta-tggaacatccttccatgcgactgttgactatgtttcatgaat-attgacacgcgttattgaacttttccagCTTATCAATCCTGCTGAGACCTTTGGGGACATTGTGATTGATTATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32837111|gb|CD976789.1|CD976789
EST:     ATGGCGGCTTCGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAG                         CTGATCAATCCTGCTGAGACCTTTGGGGATATTGTGATTGATTACCC
genomic: ATGGCGGTTTCGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAGgtaggtggat ... aattatccagCTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCC
EST: gi|18659473|gb|BM500356.1|BM500356
EST:     ATGGCGGCTTCGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAG                         CTGATCAATCCTGCTGAGACCTTTGGGGATATNGTGATTGATTACCC
genomic: ATGGCGGTTTCGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAGgtaggtggat ... aattatccagCTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCC
EST: gi|61118731|gb|DN559692.1|DN559692
EST:     ATGGCGGCTTCGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAG                         CTGATCAATCCTGCTGAGACCTTTGGGGATATTGTGATTGATTACCC
genomic: ATGGCGGTTTCGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAGgtaggtggat ... aattatccagCTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCC
EST: gi|5566676|gb|AI881587.1|AI881587
EST:     ATGGCGGTTTTGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAG                         CTGATCAATCCTGCTGAGACCTTTGGGGATATTGTGATTGATTACCC
genomic: ATGGCGGTTTCGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAGgtaggtggat ... aattatccagCTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCC
EST: gi|87156285|gb|DY401074.1|DY401074
EST:     ATGGCGGTTTTGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAG                         CTGATCAATCCTGCTGAGACCTTTGGGGATATTGTGATTGATTACCC
genomic: ATGGCGGTTTCGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAGgtaggtggat ... aattatccagCTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttgaatctttcatgtttcatctattattaacattctttcttaaattatccagCTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCC
                           tattaac  putative branch site (score: 1)
                 tttcatctattattaa  TA-rich tract