1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agggtattcagatttggtcattcagtgccactttttagttgtgcttttgagacatcaccaggcaggttgagactatctcacacagccattattgacccagGTTGCAGGTGTTACTTTTGATCTGCTGTTCCTTCTGGTGCTCGGCTCCTACCTGATTGTTCTCTTCTGTTTCCTAGTGATTACTACACGG
species | Zea mays |
transcript | GRMZM2G021784_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCATGTTCACCTTCTATGATGCGACGAAAGCAACTCTAAATGTCTACCAG GTTGCAGGTGTTACTTTTGATCTGCTGTTCCTTCTGGTGCTCGGCTCCTACEST: gi|4647018|gb|AI622093.1|AI622093
genomic: GCATGTTCACTTTCTATGATGCGACGAAAGCAACTCTAAATGTCTACCAGgtatgtttaa ... attgacccagGTTGCAGGTGTTACTTTTGATCTGCTGTTCCTTCTGGTGCTCGGCTCCTAC
EST: GCATGTTCACTTTCTATGATGCGACGAAAGCAACTCTAAATGTCTACCAG GTTGCAGGTGTTACTTTTGATCTGCTGTTCCTTCTGGTGCTCGGCTCCTAC
genomic: GCATGTTCACTTTCTATGATGCGACGAAAGCAACTCTAAATGTCTACCAGgtatgtttaa ... attgacccagGTTGCAGGTGTTACTTTTGATCTGCTGTTCCTTCTGGTGCTCGGCTCCTAC
tttgagacatcaccaggcaggttgagactatctcacacagccattattgacccagGTTGCAGGTGTTACTTTTGATCTGCTGTTCCTTCTGGTGCTCGGCTCCTACCTGATTGTTCTCTTCTGTTTCCTAGTGATTACTACACGG
tattgac putative branch site (score: 2)
attattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggtattcagatttggtcattcagtgccactttttagttgtgcttttgagacatcaccaggcaggttgagactatctcacacagccattattgacccagGTTGCAGGTGTTACTTTTGATCTGCTGTTCCTTCTGGTGCTCGGCTCCTACCTGATTGTTCTCTTCTGTTTCCTAGTGATTACTACACGG
- - - - - - - - - cattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - catcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacaca