1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatacttttgagccagcttacttttttttattgtcttgtaaaaggtggctaactcccattgagcattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAAAGTTCTGGACTTACAAGATAAG
species | Zea mays |
transcript | GRMZM2G020040_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAA TACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGATAAEST: gi|87155962|gb|DY400751.1|DY400751
genomic: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAAgtatactttt ... cattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAA
EST: GGAGAAGGAAAACCTGCAGAAAAA TACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAAEST: gi|5901244|gb|AW042344.1|AW042344
genomic: GGAGAAGGAAAACCTGCAGAAAAAgtatactttt ... cattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAA
EST: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAA TACCCCTGTCTTTAGCCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAAEST: gi|32932694|gb|CF037506.1|CF037506
genomic: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAAgtatactttt ... cattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAA
EST: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAA TACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGATAAEST: gi|211109353|gb|FL402583.1|FL402583
genomic: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAAgtatactttt ... cattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAA
EST: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAA TACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAAEST: gi|32932673|gb|CF037485.1|CF037485
genomic: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAAgtatactttt ... cattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAA
EST: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAA TACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGATAAEST: gi|211021977|gb|FL373955.1|FL373955
genomic: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAAgtatactttt ... cattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAA
EST: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAA TACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGATAAEST: gi|116828779|gb|EC861048.1|EC861048
genomic: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAAgtatactttt ... cattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAA
EST: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAAGAAGAC-TGCAGAAAAA TACCCCTGTCTTTAGCCCACCAGTTTTCACATCTGAAGAAGTTTCTGCGAAEST: gi|60342253|gb|DN209226.1|DN209226
genomic: GCAGAGAAAGTGAAAGCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAAgtatactttt ... cattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAA
EST: GCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAA TACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGATAA
genomic: GCTTGGCTGAAGGAGAAGGAAAACCTGCAGAAAAAgtatactttt ... cattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAA
tacttttttttattgtcttgtaaaaggtggctaactcccattgagcattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAAAGTTCTGGACTTACAAGATAAG
ggctaac putative branch site (score: 225)
ttttttattgtctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacttttgagccagcttacttttttttattgtcttgtaaaaggtggctaactcccattgagcattttgcagTACCCCTGTCTTTAACCCACCAGTTTTCACATCTGAAGAAGTTTCTGAGAAAGTTCTGGACTTACAAGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT