1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttagtaatttggtagaaacaccctataaaaaatcccgagactgctcgtgaaagtaattacaatgtatatactctttcattgcgcagGTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAAACAGCAAAGGAGGAAGAACCTGCTAGCAAGGAGAAAACCACCTATACGG
species | Zea mays |
transcript | GRMZM2G020040_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTTTCACATCTGAAGAAGTTTCTGAGAAAGTTCTGGACTTACAAGATAAG GTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAAEST: gi|71769916|gb|DR967853.1|DR967853
genomic: TTTTCACATCTGAAGAAGTTTCTGAGAAAGTTCTGGACTTACAAGATAAGgttagtaatt ... cattgcgcagGTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAA
EST: TTTTCACATCTGAAGAAGTTTCTGAGAAAGTTCTGGACTTACAAGATAAG GTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAAEST: gi|78022407|gb|DV490794.1|DV490794
genomic: TTTTCACATCTGAAGAAGTTTCTGAGAAAGTTCTGGACTTACAAGATAAGgttagtaatt ... cattgcgcagGTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAA
EST: GAGAAAGTTCTGGACTTACAAGACAAG GTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAAEST: gi|60342253|gb|DN209226.1|DN209226
genomic: GAGAAAGTTCTGGACTTACAAGATAAGgttagtaatt ... cattgcgcagGTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAA
EST: TTTTCACATCTGAAGAAGTTTCTGATAAAGTTCTGGACTTACAAGATAAG GTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAAEST: gi|5706316|gb|AI942092.1|AI942092
genomic: TTTTCACATCTGAAGAAGTTTCTGAGAAAGTTCTGGACTTACAAGATAAGgttagtaatt ... cattgcgcagGTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAA
EST: ATCTGAAGAAGTTTCTGAGAAAGTTCTGGACTTACAAGATAAG GTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAA
genomic: ATCTGAAGAAGTTTCTGAGAAAGTTCTGGACTTACAAGATAAGgttagtaatt ... cattgcgcagGTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAA
atcccgagactgctcgtgaaagtaattacaatgtatatactctttcattgcgcagGTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAAACAGCAAAGGAGGAAGAACCTGCTAGCAAGGAGAAAACCACCTATACGG
ctctttcatt CT-rich tract
aaagtaattacaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtaatttggtagaaacaccctataaaaaatcccgagactgctcgtgaaagtaattacaatgtatatactctttcattgcgcagGTCTCAAGTGTCAATAGGATTCCAAAACCAAAACCGAAGGTCGAGAAGAAAACAGCAAAGGAGGAAGAACCTGCTAGCAAGGAGAAAACCACCTATACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA