Sequence
atgc intronic sequence ATGC exonic sequence...tttgatggttgatctaataatattttttcatttcttataggatatagggtagaatttcgtagttggcatactgattattcatccatgatgtgctttacagGAGGAGGTAGCAAAAGAGTTTGGTATTCCCACACAGTTCCAACGATTTTGGCTGTGGGCCAAGCGACAAAACCATACTTACCGACCTAACAGGCCATTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G018508_T03 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os07g06950.1 (Oryza sativa), 3'ss of exon 16
tttgatggttgatctaataatattttttcatttcttataggatat-agggtagaatttcgtagttggcatactgattattcatccatgatgtgctttacagGAGGAGGTAGCAAAAGAGTTTGGTATTCCCACACAGTTCCAACGATTTTGGCTGTGGGCCAAGCGACAAAACCATACTTACCGACCTAACAGGCCATTGT
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-catgtgcacagctatgttttagtttttttctttgtattacttgtcggagtagagttttgcagttgccaaactgattactcatatatgaagtgctttacagGAGGAGGTTGCAAAAGAGTTTGGTATTCCTACCCAATTTCAAAGATTTTGGCTGTGGGCCAAGCGACAAAACCATACATACCGGCCTAACCGTCCACTGA
upper sequence: GRMZM2G018508_T03 (Zea mays), 3'ss of exon 12
lower sequence: EFJ14291 (Selaginella moellendorffii), 3'ss of exon 13
tttgatggttgatctaataatattttttcatttcttataggatatagggtagaatttcgtagttggcatactgattattcatccatgatgtgctttacagGAGGAGGTAGCAAAAGAGTTTGGTATTCCCACACAGTTCCAACGATTTTGGCTGTGGGCCAAGCGACAAAACCATACTTACCGACCTAACAGGCCATTGT
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----------------------------------------------gtctgtagcccaacgctctgctgtccga--attttttgactttgagcttt-tagGAGGAAGTTTCCAAGGAGTTCAACGTTCCCGTAAATTGCCAAAGGTTTTGGCTATGGGCTAAGCGTCAAAACCATACTTACCGTCCGAGCAGACCATTGA
upper sequence: GRMZM2G018508_T03 (Zea mays), 3'ss of exon 12
lower sequence: EFJ18164 (Selaginella moellendorffii), 3'ss of exon 13
tttgatggttgatctaataatattttttcatttcttataggatatagggtagaatttcgtagttggcatactgattattcatccatgatgtgctttacagGAGGAGGTAGCAAAAGAGTTTGGTATTCCCACACAGTTCCAACGATTTTGGCTGTGGGCCAAGCGACAAAACCATACTTACCGACCTAACAGGCCATTGT
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----------------------------------------------gtctgtagcccaacgctctgctgtccga--agtttttgactttgcgcttt-tagGAGGAAGTTTCCAAGGAGTTCAACGTTCCCGTAAATTGCCAAAGGTTTTGGCTATGGGCTAAGCGTCAAAACCATACTTACCGTCCGAGCAGACCATTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60396042|gb|DN228912.1|DN228912EST: AAGTCCCAAGCTTCCGTATCCAAAAGCAGATGGCCTTTGCTCAATTCAAG GAGGAGGTAGCAAAAGAGTTTGGTATTCCCACACAGTTCCAACGATTTTGG
genomic: AAGTCCCAAGCTTCCGTATCCAAAAGCAGATGGCCTTTGCTCAATTCAAGgtaattacat ... tgctttacagGAGGAGGTAGCAAAAGAGTTTGGTATTCCCACACAGTTCCAACGATTTTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agggtagaatttcgtagttggcatactgattattcatccatgatgtgctttacagGAGGAGGTAGCAAAAGAGTTTGGTATTCCCACACAGTTCCAACGATTTTGGCTGTGGGCCAAGCGACAAAACCATACTTACCGACCTAACAGGCCATTGT
tactgat putative branch site (score: 2)
attattcat TA-rich tract