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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagtatggagttggacatgttttaccttatttgctaaagtatttctcttttgtgatttttttaatttacagAAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGGTAGCTTTCTCTTTTCACT

Basic information

species Zea mays
transcript GRMZM2G017086_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017086_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 3'ss of exon 12
gtacgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagtatggagttggacatgttttaccttatttgctaaagtatttctcttttgtgatttttttaatttacagAAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGGTAGCTTTCTCTTTTCACT
                                                                ||| || || |||| |   |   ||| |  |       |||||          |   |  ||||  ||    ||    | || |   || ||| | || ||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| || || |||                   
-----------------------------------------------------------aaagcttg-attgattcttcttgatactgtccgctc------agagttttgttctacctctttcgtttgaaaacaagttgtaatattctttcttcttttacttccagAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGCTCAGATGAACTGAAACAAAAACTCCAAGCTCCCCGACAG-------------------

upper sequence: GRMZM2G017086_T02 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA07G01480.1 (Glycine max), 3'ss of exon 12
gtacgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagtatggagttggacatgttttaccttatttgctaaagtatttctcttttgtgatttttttaatttacagAAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGGTAGCTTTCTCTTTTCACT
        ||       | |  || | | ||      || |||  ||   ||||  | ||    |||  | | | |   | ||  | |   | | | || ||   |  || ||        ||||||   || ||  |  |  || || || |          |||||||| ||||| || ||||| |||||||||||||| ||||| ||||| |||||     | ||| |  |||| ||| | |||                   
--------gtaaagctcactatctgcttttttgtgtgtgtttt--tgg--atagttattg----ttgagtcgga-caaattatccttggaagaatttgtttgctttctgaaat--------ttattttacaatgtcatcgtgcttggttatct----------cagAAAGTAGATTATCCTCTGGAGTTGGATGTTTATGATTTTTGTTCTGACGAACTTCGTAAAAAATTGGAAGCTCCTAGACAG-------------------

upper sequence: GRMZM2G017086_T02 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA08G20900.1 (Glycine max), 3'ss of exon 12
gtacgttagtttgttctattcccttcctcttgaacaatgatttgatgattatagcaactgggttttgtatggaatcttgtcattttcgtctgtactagtatggagttggacatgttttaccttatttgctaaagtatttctcttt-tgtgatttttttaattta---cagAAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGGTAGCTTTCTCTTTTCACT
                                    |    |   ||  | |      || || || | ||||   || |  ||   |  || || | | |    ||||| | |||||   ||  || ||||||| | | |     ||| ||  |  |   |||   |||||||| ||||| || ||||| |||||||||||||| ||||| || ||||| ||     | ||| |  | || ||| | |||                   
----------------------------------gtagagctcactgtcttttttgtgtgtgtgtttt-tggatagttattgtt--gggttggacaaat-tatccttgga-aagttttgt-ttgctttctaaagtttatttgacaatgtcatcgtgcttggttatctcagAAAGTAGATTATCCCCTGGAGTTGGATGTTTATGATTTTTGTTCAGATGATCTTCGTAAAAAATTGGATGCTCCTAGACAG-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32866635|gb|CF006317.1|CF006317
EST:     TTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGA                         AAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAA
genomic: TTCGCTTCTTTTGGAAAAGGGAATCAAACCAAAAGGCAAAGATTTTACGAgtacgttagt ... taatttacagAAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttttaccttatttgctaaagtatttctcttttgtgatttttttaatttacagAAAGTTGATTACCCACTGGAATTGGATGTTTATGAATTTTGCTCTGATGAACTGAAACAGAAACTCCAAGCACCTCGGCAGGTAGCTTTCTCTTTTCACT
                         tttctcttttgtgatt  CT-rich tract
                  taaagtatttctcttt  TA-rich tract