1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gatttgtctttctatgcatactaggaaaatcttgtgccagttgatcctgcattatataagcggtatttgctaatctggacccatttatgatgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACACTTGAGTCCCTGTGTCGATCACTACAGGCAGAAAGGAAACAAGGCCGCT
species | Zea mays |
transcript | GRMZM2G015730_T03 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAG CGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACAEST: gi|211265994|gb|FL478571.1|FL478571
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAGgtaatacgtg ... tgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
EST: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAG CGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACAEST: gi|24766462|gb|CA401615.1|CA401615
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAGgtaatacgtg ... tgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
EST: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAG CGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACAEST: gi|67019010|gb|CO447759.1|CO447759
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAGgtaatacgtg ... tgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
EST: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAG CGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACAEST: gi|31354045|gb|CD438402.1|CD438402
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAGgtaatacgtg ... tgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
EST: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAG CGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACAEST: gi|74244820|gb|DT652734.1|DT652734
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAGgtaatacgtg ... tgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
EST: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAG CGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACAEST: gi|24769021|gb|CA404150.1|CA404150
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAGgtaatacgtg ... tgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
EST: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAG CGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACAEST: gi|148952378|gb|EC898193.2|EC898193
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAGgtaatacgtg ... tgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
EST: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAG CGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACAEST: gi|37400434|gb|CF637568.1|CF637568
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAGgtaatacgtg ... tgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
EST: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAG CGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACAEST: gi|60339601|gb|DN206574.1|DN206574
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAGgtaatacgtg ... tgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
EST: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAG CGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
genomic: AGGGAAAATGTGAGAACTCAGATATTGCTCTTGTGAAGCTCATTGAAGAGgtaatacgtg ... tgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACA
cctgcattatataagcggtatttgctaatctggacccatttatgatgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACACTTGAGTCCCTGTGTCGATCACTACAGGCAGAAAGGAAACAAGGCCGCT
tgctaat putative branch site (score: 2)
attatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttgtctttctatgcatactaggaaaatcttgtgccagttgatcctgcattatataagcggtatttgctaatctggacccatttatgatgccttgcagCGTGAGCTAACGAAGAAGCAAATAGAGAAATTGAAAAACCAAAAGGAGACACTTGAGTCCCTGTGTCGATCACTACAGGCAGAAAGGAAACAAGGCCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA