Sequence
atgc intronic sequence ATGC exonic sequencegtgtctatgtcttgcatgatatttcttttcttgcgtcatttgagtgcataccataatttttcgtgtttgtgcagGTGCTTGCTAAATTTTTATCTGCACCATTGTCATTTGGAATTGAGAAAGACACAGAAGGATGGCCATATGTTGCATTCGATCTGAATCCTGTTGTTGTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G009715_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 3'ss of exon 13
---------------------------------------------------------------gtgtctatgtcttgcatgatatttcttttcttgcgtcatttgagtgcataccataatttttcgtgtttgtgcagGTGCTTGCTAAATTTTTATCTGCACCATTGTCATTTGGAATTGAGAAAGACACAGAAGGATGGCCATATGTTGCATTCGATCTGAATCCTGTTGTTGTAA
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gtatcttgcacaatattttttccttcatttatttgataccaggatcctctcccattttttgttaattaaaaataatggaaaat-tttcctttcttgtgggagctg-gtcaatagaatcattttttttg-----gcagGTCCTTGCAAAGTTTTTGTCTGCACCATTATCTTTTGGGCTTGACAAAGATGCGGAAGGTTGGCCATATGTTGCATTTGATCTAAATCCTGCTGTCGTAA
upper sequence: GRMZM2G009715_T01 (Zea mays), 3'ss of exon 12
lower sequence: PP1S114_83V6.1 (Physcomitrella patens), 3'ss of exon 13
-----------------------------------------------------------------------gtgtctatgtcttgcatga---tatttcttttcttgcgtc----atttgag-tgcataccataatttttcgtgtttgtgc-agGTGCTTGCTAAATTTTTATCTGCACCATTGTCATTTGGAATTGAGAAAGACACAGAAGGATGGCCATATGTTGCATTCGATCTGAATCCTGTTGTTGTAA
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gtgggggtcctgcttttgtgtcggttctttttcgaacccaaaagctattcacatctgatccattttctaagatgacactactacgtaaggatgcatgcctctacgtatgttctcagtttgaactgtgcactcaactttattgtgtgcattccagGTACTTGCCAACTTTCTGTCTACCCCATTGGCGACTGGTCTTGGTGGAGATGCAGCTGGTTGGCCATATGTTGCATTCGATCTGGATCCTGGTCGAGTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttcttttcttgcgtcatttgagtgcataccataatttttcgtgtttgtgcagGTGCTTGCTAAATTTTTATCTGCACCATTGTCATTTGGAATTGAGAAAGACACAGAAGGATGGCCATATGTTGCATTCGATCTGAATCCTGTTGTTGTAA
ataccataattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtctatgtcttgcatgatatttcttttcttgcgtcatttgagtgcataccataatttttcgtgtttgtgcagGTGCTTGCTAAATTTTTATCTGCACCATTGTCATTTGGAATTGAGAAAGACACAGAAGGATGGCCATATGTTGCATTCGATCTGAATCCTGTTGTTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG