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gtaattttgaatcaaagtttgatctattgttttcatttgacttagagtgttaaattacgtttcccctcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAG
species | Zea mays |
transcript | GRMZM2G006107_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCTTCTGCTGATCGCTCACATCGCTATGGTGGAAGAAATGACCGTGACAG ATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAGEST: gi|71427167|gb|DR808217.1|DR808217
genomic: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAGgtaattttga ... tcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAG
EST: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAG ATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAGEST: gi|7216421|gb|AW562543.1|AW562543
genomic: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAGgtaattttga ... tcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAG
EST: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAG ATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAGEST: gi|31355909|gb|CD440266.1|CD440266
genomic: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAGgtaattttga ... tcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAG
EST: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAG ATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAG
genomic: CCTTCTGCTGATCGCTCACATCGTTATGGTGGAAGAAATGACCGTGACAGgtaattttga ... tcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAG
atctattgttttcatttgacttagagtgttaaattacgtttcccctcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAG
atttgac putative branch site (score: 4)
ttacgtttcccctctt putative PPT
tgttaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttgaatcaaagtttgatctattgttttcatttgacttagagtgttaaattacgtttcccctcttatgtagATACATGGGTTACCGGGGTTCCCGCCATCGATCACCTCCTAGACGGTATAGAAGCCCACCCAGAGGAAGAGTGTCATCGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA