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gtaagcaactctgatctctctcccttatgcaactatgatgatagaattttgataaaaaatgtatgttgagcgaattctttttttggtgagtgaaactctactgcgaagcacctcaacctttactcttaccttcctgtagGCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTCGTCCAATATTTTACTGGACACCGAGCTCAATCCTCACATTTCTGATGCT
species | Zea mays |
transcript | GRMZM2G004572_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGCTCTGCACGTGCACTAGA GCATCTTCATGAAATTTTTTCTCGATCTATAATTCACAAGAACTTTAAGTCEST: gi|60397780|gb|DN230596.1|DN230596
genomic: GGCTCTGCACGTGCACTAGAgtaagcaact ... cttcctgtagGCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTC
EST: AGTTGGAATTCTCGTGTTAAGATTGCGTTGGGCTCTGCACGTGCACTAGA GCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTCEST: gi|74241624|gb|DT649538.1|DT649538
genomic: AGTTGGAATTCTCGTGTTAAGATTGCGTTGGGCTCTGCACGTGCACTAGAgtaagcaact ... cttcctgtagGCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTC
EST: GCACGTGCACTAGA GCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTCEST: gi|32932312|gb|CF037124.1|CF037124
genomic: GCACGTGCACTAGAgtaagcaact ... cttcctgtagGCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTC
EST: AGTTGGAATTCTCGTGTTAAGATTGCGTTGGGCTCTGCACGTGCACTAGA GCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTCEST: gi|76018776|gb|DT945946.1|DT945946
genomic: AGTTGGAATTCTCGTGTTAAGATTGCGTTGGGCTCTGCACGTGCACTAGAgtaagcaact ... cttcctgtagGCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTC
EST: TGTTAAGATTGCGTTGGGCTCTGCACGTGCACTAGA GCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTC
genomic: TGTTAAGATTGCGTTGGGCTCTGCACGTGCACTAGAgtaagcaact ... cttcctgtagGCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTC
ggtgagtgaaactctactgcgaagcacctcaacctttactcttaccttcctgtagGCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTCGTCCAATATTTTACTGGACACCGAGCTCAATCCTCACATTTCTGATGCT
ctcttac putative branch site (score: 214)
cctttactcttacctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaactctgatctctctcccttatgcaactatgatgatagaattttgataaaaaatgtatgttgagcgaattctttttttggtgagtgaaactctactgcgaagcacctcaacctttactcttaccttcctgtagGCATCTTCATGAAATTTGTTCTCCATCTATAATTCACAAGAACTTTAAGTCGTCCAATATTTTACTGGACACCGAGCTCAATCCTCACATTTCTGATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA