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gtaaaaaaatatggaacatctgaatctttgtttattattctgtatttatatcgctgtattttgtatgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG
species | Zea mays |
transcript | GRMZM2G000749_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTGAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|211264027|gb|FL283565.1|FL283565
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|88756696|gb|DY540837.1|DY540837
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|76926950|gb|DV171069.1|DV171069
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|71304827|gb|DR788527.1|DR788527
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|211534613|gb|FL443294.1|FL443294
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTGAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|211264028|gb|FL283566.1|FL283566
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|78544033|gb|DV621531.1|DV621531
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTGAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|60336702|gb|DN203675.1|DN203675
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|211138345|gb|FL473246.1|FL473246
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: GAGCAATAATATACATCAGCAG GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|71304825|gb|DR788526.1|DR788526
genomic: GAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: GATCAGCCCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACTTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|71757532|gb|DR955469.1|DR955469
genomic: GATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|67040818|gb|CO467073.1|CO467073
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCATACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCAEST: gi|211264029|gb|FL283567.1|FL283567
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
EST: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAG GCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
genomic: AGATCAGACCAGTGAATAAGGATGTCCTGAGCAATAATATACATCAGCAGgtaaaaaaat ... tgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCA
tgaatctttgtttattattctgtatttatatcgctgtattttgtatgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG
tttgtttattattctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaaatatggaacatctgaatctttgtttattattctgtatttatatcgctgtattttgtatgatgctcagGCTATTCAGGACCTAAGTCTCACTTTAAAAGCTCTAAAAGGAAACTTGGCATCTGGAGGAGAGTCAAATGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG