Sequence
atgc intronic sequence ATGC exonic sequencegtttgttgtttctagattaacagtaaccatagtgctaaattctatgttgatatcaatttggaagATAATGCAAACGAAATTACAGTACACTATCGAGGAAAAGGTGATTGAGAGAGCATATAAGAAGCTAGCATTGGATGCTTTAGTTATTCAGCAAGGACGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AC235535.1_FGT001 (Zea mays), 3'ss of exon 12
lower sequence: 13113.m00246 (Oryza sativa), 3'ss of exon 12
gtttgttgtttctagattaacagtaaccatagtgctaaattctatgttgatatcaatttggaagATAATGCAAACGAAATTACAGTACACTATCGAGGAAAAGGTGATTGAGAGAGCATATAAGAAGCTAGCATTGGATGCTTTAGTTATTCAGCAAGGACGAT---------------
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gtttgtcaatcttttctttagaata-ttacgtaacaatcttttgtattgatatctaag-ataggatgacgaaaacttaatttcagTATACCATCGAGGAGAAAGTGATTGAGAGGGCATACAAGAAGCTTGCATTGGATGCTTTGGTCATTCAACAAGGCCGACTGGCAGAGCAGAAGA
upper sequence: AC235535.1_FGT001 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 3'ss of exon 12
-----gtttg--ttgtttctagattaacagtaacca---tagtgctaaattctatgttgatatcaatttggaagATAATGCAAACGAAAT------TACAGTACACTATCGAGGAAAAGGTGATTGAGAGAGCATATAAGAAGCTAGCATTGGATGCTTTAGTTATTCAGCAAGGACGAT---------------
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gttttatttaatttattttaagatttaaaaacactggtttagcactaagcaatatcttc-tatttatttatataacagaatatgcttcatattctatgcagTATACAATTGAGGAAAAGGTGATTGAGAGAGCTTATAAGAAGCTTGCCCTGGATGCTTTGGTCATACAACAGGGTCGATTGGCAGAGCAGAAAG
upper sequence: AC235535.1_FGT001 (Zea mays), 3'ss of exon 12
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 12
gtttgtt--gtttcta-gattaacagtaa-ccatagtgctaaattctatgttgatatcaatttggaagATAATGCAAACGAAATTACAGTACACTATCGAGGAAAAGGTGATTGAGAGAGCATATAAGAAGCTAGCATTGGATGCTTTAGTTATTCAGCAAGGACGAT---------------
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gttcattttgttcttgtgttttgcattaagctatctaaagatatcatatataaatgcttatttctt---ctttctgggttaattatcagTATACCATCGAGGAAAAGGTGATTGAGAGAGCTTATAAAAAATTGGCACTCGATGCTTTGGTGATTCAACAAGGACGGTTAGCAGAGCAGAAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctagattaacagtaaccatagtgctaaattctatgttgatatcaatttggaagATAATGCAAACGAAATTACAGTACACTATCGAGGAAAAGGTGATTGAGAGAGCATATAAGAAGCTAGCATTGGATGCTTTAGTTATTCAGCAAGGACGAT
taaattctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttgtttctagattaacagtaaccatagtgctaaattctatgttgatatcaatttggaagATAATGCAAACGAAATTACAGTACACTATCGAGGAAAAGGTGATTGAGAGAGCATATAAGAAGCTAGCATTGGATGCTTTAGTTATTCAGCAAGGACGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG