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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagatacgcatttgggatcatttaaacaatgacattttgttcagcaactgactaaatttaggcaactggcagGTCTATTTTGCTCTGATTTTCACAGCTTTTGGAGTTTCCCAAACAAGTGCAACGGCAACAGATTCAACAAAAGCCCAGGAATCCACAATTTCAATACTAA

Basic information

species Zea mays
transcript AC233882.1_FGT003
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC233882.1_FGT003 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os01g50080.1 (Oryza sativa), 3'ss of exon 8
gtaagagatacgcatttgggatcatttaaacaatgacatttt-gttcagcaac--tgactaaatt---taggcaactggcagGTCTATTTTGCTCTGATTTTCACAGCTTTTGGAGTTTCCCAAACAAGTGCAACGGCAACAGATTCAACAAAAGCCCAGGAATCCACAATTTCAATACTAA
||||||||||| ||||||| |||| ||| | || |   ||||  ||||   ||  |   | |||    ||  |   | |||||| || |||||| |  ||||||||||||||||| |||| |||||||| |||| |||| | |||||| |||||||||| |||||| ||  ||||||| || 
gtaagagatacacatttggcatcacttatataaggttgtttttattcaatgacaatatgtcaatcttgtaatcgctttgcagGTTTACTTTGCTTTAGTTTTCACAGCTTTTGGAATTTCTCAAACAAGCGCAATGGCATCGGATTCATCAAAAGCCCATGAATCCGCAGCTTCAATATTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32791799|gb|CD944035.1|CD944035
EST:     TAAAGACGTTTTTAGG                         GTCTATTTTGCCCTGATTTTCACAGCTTTTGGAGTTTCCCAAACAAGTGCA
genomic: TAAAGACGTTTTTAGGgtaagagata ... caactggcagGTCTATTTTGCTCTGATTTTCACAGCTTTTGGAGTTTCCCAAACAAGTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttaaacaatgacattttgttcagcaactgactaaatttaggcaactggcagGTCTATTTTGCTCTGATTTTCACAGCTTTTGGAGTTTCCCAAACAAGTGCAACGGCAACAGATTCAACAAAAGCCCAGGAATCCACAATTTCAATACTAA
                                gactaaa  putative branch site (score: 2)
                                 actaaattta  TA-rich tract